Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40181
         (437 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   1e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   0.87 
UniRef50_Q2RZ26 Cluster: Cadherin domain protein; n=1; Salinibac...    33   3.5  
UniRef50_Q3C0G1 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 436 LLRWLDELTAHLVLSGYWSP 377
           LLRW+DELTAHLVLSGYWSP
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 0.87
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 246 WYLPARTHNRSYHQ 205
           WYLPARTH RSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q2RZ26 Cluster: Cadherin domain protein; n=1; Salinibacter
           ruber DSM 13855|Rep: Cadherin domain protein -
           Salinibacter ruber (strain DSM 13855)
          Length = 1065

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = -1

Query: 380 PIDIYNVNAPPTLRYKL*GLSIVTTAAPPFKPKRITASRQK*QGGGTYPRGLTTGPTTSN 201
           PI + + NAPPT+       SI    +PP +   ++ +     G GT  R L +GP   +
Sbjct: 286 PIVVTSANAPPTVSLDPPNASIAENNSPPTRVATVSVAD---DGLGTNERSL-SGPDAGS 341

Query: 200 YANYNFAGFTF-------ITRCYSFTVEVN 132
           +A  +  G           TR YS TV VN
Sbjct: 342 FALTDANGLVLTESADAEATRRYSVTVAVN 371


>UniRef50_Q3C0G1 Cluster: Putative uncharacterized protein; n=1;
           Xanthomonas campestris pv. vesicatoria str. 85-10|Rep:
           Putative uncharacterized protein - Xanthomonas
           campestris pv. vesicatoria (strain 85-10)
          Length = 197

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 304 LPHPSNRNALLLHGRNSRAVVPTRADSQQVLPPVITQIIILRVSLLLHD 158
           +PHP   +A++  GR  R   PTR    +VLP +I  +   +V L  H+
Sbjct: 69  IPHPPG-DAVIWDGRKMRTFCPTRYRLSKVLPDLIRSMPEKKVILAAHE 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,094,971
Number of Sequences: 1657284
Number of extensions: 9701861
Number of successful extensions: 20396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20392
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)