Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40181
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   3.9  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   6.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    24   8.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   8.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   8.9  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    24   8.9  

>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 105 ISIEKLVPACEIRTPVHRFNTNAPDVLSFRP 13
           I I+ L  + E+  PVH +NT  P VL F P
Sbjct: 265 IEIQALANSLEV--PVHVYNTEGP-VLKFNP 292


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/30 (26%), Positives = 22/30 (73%)
 Frame = -2

Query: 226 SQQVLPPVITQIIILRVSLLLHDVIPSPWK 137
           ++Q+L  +    +++R+ L L+++IP+P++
Sbjct: 151 TKQILQTLHALNMLIRIRLSLYEIIPTPFQ 180


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 416 AHSPPGVKWLLEPIDIYNVNAPPTLR 339
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 304 LPHPSNRNALLLHGRNSRAVVPTRADSQQVLPPVITQIIILRVSLLLHDVIP 149
           L  P+  NALL HG+ + + V   +DS      V  + +I+  S   H  IP
Sbjct: 133 LAFPTITNALLQHGQKNTSDVDDSSDSSS---DVDEETLIVSKSKKAHKDIP 181


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 75  HRRVPIFLLKYVRTQQMFTIDF-HGEGITSCNKSETRKIIICV 200
           HR VP+ ++K +  Q +  +D+ H E        +   ++IC+
Sbjct: 182 HRGVPVGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLICI 224


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 168 KSETRKIIICVITGGRT 218
           K   +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 422 GRAHSPPGVKWLLEPIDIYN 363
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 287 PKRITASRQK*QGGGTYPRGLTTGPTTSNYANYNF 183
           P +++A +Q    GG  P  ++  PT  + A Y+F
Sbjct: 399 PAKVSALQQMLIAGGVNPLKVSVIPTLLHVAGYSF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,343
Number of Sequences: 5004
Number of extensions: 39019
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)