Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40181
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270...    29   1.2  
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           27   6.6  
01_06_1749 - 39636951-39638102                                         27   6.6  
01_06_1522 - 37962431-37963060,37963216-37963542                       27   6.6  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    27   6.6  

>04_03_0830 -
           20125827-20125913,20126262-20126357,20126974-20127053,
           20127124-20127220,20127457-20127544,20128491-20128576,
           20129358-20130530
          Length = 568

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 141 HGEGITSC---NKSETRKIIICVITGGRTCCESARV-GTTALLFLP 266
           H E    C   N+ + + +++CV    R CC  A V G  AL  LP
Sbjct: 433 HNEDSKQCAIENRPQVQLLVVCVTAQPRLCCPPAMVAGREALACLP 478


>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 326 LTTYISRWVAHLRCRC 373
           LTT +  W AH RCRC
Sbjct: 121 LTTALPPWEAHPRCRC 136


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 320 SIVTTAAPPFKPKRITA 270
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 428 MVGRAHSPPGVKWLLEPID 372
           +VG+ H PPG +WL E +D
Sbjct: 44  LVGQLHLPPGGRWLDEYMD 62


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 280 RFGLKGGAAVVTILRPYNLYLKVGGAFTL*MSMGSSNHLTPG 405
           + G+ G   V+   R   + L +GG     ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,676
Number of Sequences: 37544
Number of extensions: 287449
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)