Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40181
(437 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 32 0.24
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 31 0.55
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 2.2
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31) 27 6.8
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6) 27 8.9
SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5) 27 8.9
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 31.9 bits (69), Expect = 0.24
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -3
Query: 414 SQPTWC*VVTGAHRHLQRKCATHLEI*VVRSQYSYNGCPTLQTETHYCFTAEIAGRWYLP 235
+Q WC T +L TH + G P+ +T+ + C +I WY P
Sbjct: 583 TQTNWC-YPTNTQANLCHPTKTHANWNHPSKTQANCGHPS-ETQAYLCHPTKIQANWYHP 640
Query: 234 ARTHNRSYH 208
++T YH
Sbjct: 641 SKTQANLYH 649
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -3
Query: 414 SQPTWC*VVTGAHRHLQRKCATHLEI*VVRSQYSYNGCPTLQTETHYCFTAEIAGRWYLP 235
+Q WC T +L TH G P+ +T+ + C +I WY P
Sbjct: 51 TQTNWC-YPTNTQANLCHPTKTHANWNHPSKTQDNCGHPS-ETQAYLCHPTKIQANWYHP 108
Query: 234 ARTHNRSYH 208
++T YH
Sbjct: 109 SKTQANLYH 117
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 324 SQYSYNGCPTLQTETHYCFTAEIAGRWYLPART 226
S+ N C +T+ ++C T++I WY P +T
Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 324 SQYSYNGCPTLQTETHYCFTAEIAGRWYLPART 226
S+ N C +T+ ++C T++I WY P +T
Sbjct: 30 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 309 NGCPTLQTETHYCFTAEIAGRWYLPARTHNRSYH 208
N C +T+ + C + WY P++T YH
Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 306 GCPTLQTETHYCFTAEIAGRWYLPARTHNRSYH 208
G PT +T+ + C +I W+ P++T YH
Sbjct: 107 GHPT-ETQAYLCHPTKIQVNWHHPSKTQANLYH 138
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -3
Query: 309 NGCPTLQTETHYCFTAEIAGRWYLPARTHNRSYH 208
N C +T+ C + WY P++T YH
Sbjct: 325 NWCHPTKTQACLCHPTKTQANWYHPSKTQVNWYH 358
>SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 571
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 113 TYVFQ*KNWY--PPVRFEHRCIASTRMHRTSYLLGHDDL 3
TY WY PP+R ++T +H+ Y++G +DL
Sbjct: 437 TYKVDNDAWYEIPPMRHRRSGASATYLHQQIYIIGGEDL 475
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 300 PTLQTETHYCFTAEIAGRWYLPARTHNRSYHQ*LRKL*FC 181
P L YC EI GRWY R+H + + L FC
Sbjct: 806 PKLSQFWRYCILPEILGRWY-TRRSHLLKAVEGCKSLCFC 844
>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 301 PHPSNRNALLLHGRNSRAVVPTRADSQQVLPPVITQIIILRVSLLLHDVIPSPWKSIVNI 122
P S+R A + S +P+ + + +I I+I+ +S+++HD + + +VN+
Sbjct: 753 PQNSSRPATAMLHDESIIYLPSSSPYFIITMIIIVSIVIVIISIIIHDTDDTDTRVVVNL 812
Query: 121 C*VRTYFNRK 92
FNRK
Sbjct: 813 ------FNRK 816
>SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31)
Length = 306
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 128 EHLLSTYVFQ*KNWYPPVRFEHRCIASTRMHRTSYL 21
E L +T +F+ + P+ EH ++STR+ RT+YL
Sbjct: 25 EELSATPLFR-TTYKHPIYSEHDELSSTRLFRTAYL 59
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 128 EHLLSTYVFQ*KNWYPPVRFEHRCIASTRMHRTSYL 21
E L +T +F+ + P+ EH ++STR+ RT+YL
Sbjct: 109 EELSATPLFR-TTYKHPIYSEHDELSSTRLFRTAYL 143
>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
Length = 465
Score = 26.6 bits (56), Expect = 8.9
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 297 WGSRCNYTETLQLISQGGWRIYVVD 371
WGS C +++ +++ + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151
>SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)
Length = 279
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 69 ESHRRVPIFLLKYVRTQQMFTIDF 140
ES +R+PIFLL+ V +F DF
Sbjct: 166 ESWKRIPIFLLQSVGETILFDCDF 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,761
Number of Sequences: 59808
Number of extensions: 314056
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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