Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40181
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    27   7.9  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    27   7.9  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       27   7.9  

>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 410 SPPGVKWLLEPIDIYNVNAPPTLRYKL*GLSIVTTAAPP 294
           +P   K  + P  +    APPT+R  +   ++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  FLLKYVRTQQMFTIDFHGEGITSCNKSETRKIIICVITG 209
           FLLK   T  M T  F    I S  K+ ++K ++ ++TG
Sbjct: 227 FLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTG 265


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  FLLKYVRTQQMFTIDFHGEGITSCNKSETRKIIICVITG 209
           FLLK   T  M T  F    I S  K+ ++K ++ ++TG
Sbjct: 227 FLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTG 265


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  FLLKYVRTQQMFTIDFHGEGITSCNKSETRKIIICVITG 209
           FLLK   T  M T  F    I S  K+ ++K ++ ++TG
Sbjct: 227 FLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTG 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,514
Number of Sequences: 27780
Number of extensions: 231802
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)