Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40181
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37720.1 68415.m04625 expressed protein                             30   0.79 
At2g32680.1 68415.m03995 disease resistance family protein conta...    26   9.7  

>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = +3

Query: 99  LKYVRTQQMFTIDFHGEGITSCNKSETRKIIICVITGGRTCCESARVGTTALLFLP*SSN 278
           + ++R  Q  TI F G+ +      E  + ++C+ TGG+   E   VG+   L +P    
Sbjct: 202 VNFLRRMQNKTIAFIGDSLGR----EQFQSLMCMATGGKESPEVQNVGSEYGLVIP--KG 255

Query: 279 AFRFEGWGSRCNYTETLQL 335
           A R  GW  R   T T  L
Sbjct: 256 APRPGGWAYRFPTTNTTVL 274


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  IFLLKYVRTQQMFTIDFHGEGITSC 164
           +FLL  V    +FT++FH  GI +C
Sbjct: 13  LFLLCCVCHSSIFTLNFHFTGIVAC 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,016
Number of Sequences: 28952
Number of extensions: 214879
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)