Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40180
         (735 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YY97 Cluster: Putative uncharacterized protein; n=6; ...    37   0.45 
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    36   1.0  
UniRef50_A4VDV2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  

>UniRef50_Q4YY97 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 636

 Score = 37.1 bits (82), Expect = 0.45
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
 Frame = -2

Query: 716 NSIYNIQIYNQQLSYTHYLSQQYLHFTIRYFALRVFQNL*VYY*NFIFKSRKHSIFQI*K 537
           N   N  I+N+QL   H ++    ++     + + F +L V+Y   I+ + K   +++ K
Sbjct: 5   NDNINNDIFNEQLK--HVINNYLCNYVT---SSKYFNHLCVFY---IYNNEKEKFYELMK 56

Query: 536 K-TSLCTGLEFSLERSFYLFMNLTYKYRLTSKYLAFLIWSSHYNELNSIYYNYNS 375
             T+ C G E  L   FYL   + YK +   +Y+  +  + +Y   N+  YN ++
Sbjct: 57  NFTNYCFGYE-DLFILFYLICKINYKNKDIIRYMLKVFENYYYKIDNTFSYNISN 110


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
 Frame = -2

Query: 725 FLFNSIYNIQIYNQQLSYTHYLSQQYLHFTIRYFALRVFQNL*VY-Y*NFIFKSRKHSIF 549
           F+  +  NIQI N+ L Y + +   Y +    +  L +  N+ +  Y NF +K   + +F
Sbjct: 528 FILKNFNNIQILNK-LFYVNNIFIYYKYEKKLFIYLNIINNIIIKKYLNF-YKYTYNKLF 585

Query: 548 QI*KKTSLCTGLEFSLERSFYLFMNLTYKYRLTSKYLAFLIWSSHYNELNSIYYNYNSFT 369
            I K  +     E   + ++Y ++ L  KY L   Y  ++ +   YN   ++Y+  N F 
Sbjct: 586 FIKKYNNFLYLYEI-FKYNWYKYLLLNNKYNLYIIYNNYIKYLYKYNININLYFIKNLFY 644

Query: 368 KKKRFTTRH 342
               F   H
Sbjct: 645 NNNNFIHNH 653


>UniRef50_A4VDV2 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 241

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
 Frame = -2

Query: 686 QQLSYTHYLSQQ-YLHFTIRYFALRVFQNL*VYY*NFIFKSRKHSIFQI*KKTSLCTGLE 510
           Q++ + +++++  +L+ TI  F  +VFQ L  +     +K +   I QI  K S   G+ 
Sbjct: 10  QRILFHNFINEYLFLYHTIFNFEPKVFQLLKFFQTKQNYK-KSTFIDQIGFKLSSNKGIC 68

Query: 509 FSLERSFYLFMNLTYKYRLTSKYLAFLIWSSHYNELNSIYYNYNSFTKKKRFTTRH 342
               R F LF  ++  + L    +  LI+   YN++NS+Y+ +   ++   F  +H
Sbjct: 69  SLKVRRFVLFQIISQLF-LIIYLIDLLIFKQIYNQMNSLYFFFRKISQILLFFAKH 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,169,332
Number of Sequences: 1657284
Number of extensions: 12375077
Number of successful extensions: 27248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27229
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)