Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40180
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    27   2.8  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.4  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 488 YLFMNLTYKYRLTSKYLAFLIWSSHYNELNSIYYNYNSFTK 366
           Y F N++YK +L++KY+ F + +        IY   + FT+
Sbjct: 303 YAFFNMSYKAKLSTKYV-FRVLAQLSENFIFIYLGMSLFTQ 342


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 462 ISLNVKISRIPYLVLTLQRAEFYILQLQFIY 370
           + LNV +S     +LTL    + ILQ+ FIY
Sbjct: 787 VILNVNVSTTAMCLLTLLIGIYLILQVVFIY 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,814
Number of Sequences: 5004
Number of extensions: 59114
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)