Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40180
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channe...    29   4.5  
AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying de...    29   4.5  
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 485 LFMNLTYKYRLTSKYLAFLIWSSHYNELNSIYYNYNSFTKKK 360
           ++++L      T+ + AF +W  H N+    + NY+S+T+ K
Sbjct: 19  IYVSLAVAVVSTAAFNAFYVWPRH-NKYEEFFANYDSYTRMK 59


>AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channel
           EGL-2 protein.
          Length = 956

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 718 LIQFIIFRYITSNYHTHTTSPNNIYILQ*DILR*GYFKTCRYIIKTLFLNQENIRYFKFK 539
           ++  I F  I  N+HT    P    +++  ++R  YFK+  ++I  L     +I ++ FK
Sbjct: 269 IVDVIFFADILLNFHTTFVGPGGEVVIEPSVIRQNYFKSW-FLIDLLSCLPYDI-FYMFK 326

Query: 538 K 536
           +
Sbjct: 327 R 327


>AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying
           defective protein 2 protein.
          Length = 956

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 718 LIQFIIFRYITSNYHTHTTSPNNIYILQ*DILR*GYFKTCRYIIKTLFLNQENIRYFKFK 539
           ++  I F  I  N+HT    P    +++  ++R  YFK+  ++I  L     +I ++ FK
Sbjct: 269 IVDVIFFADILLNFHTTFVGPGGEVVIEPSVIRQNYFKSW-FLIDLLSCLPYDI-FYMFK 326

Query: 538 K 536
           +
Sbjct: 327 R 327


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 697 RYITSNYHTHTTSPNNIYI 641
           +YI  NYH + TSP+ I++
Sbjct: 72  KYIRENYHVNETSPSRIWV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,819
Number of Sequences: 27780
Number of extensions: 316604
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)