Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40180
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.1  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 446 KYLAFLIWSSHYNELNSIYYNYNSFTKK 363
           KY  +  ++++YN  N+   NYN+  KK
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNNYNNNYKK 350


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 419 SHYNELNSIYYNYN 378
           S+YN  N+ Y NYN
Sbjct: 92  SNYNNYNNNYNNYN 105


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 453 NVKISRIPYLVLTLQRAEFYILQLQFIYKKKTIHNAP 343
           N+K+SR   +V  +   E YI+   +  K    +N P
Sbjct: 181 NLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDP 217


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 716 NSIYNIQIYNQQLSYTHYL 660
           N  YN   YN++L Y +Y+
Sbjct: 328 NYKYNYNNYNKKLYYKNYI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,204
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)