Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40178
         (829 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VEW3 Cluster: CG10311-PA; n=5; Endopterygota|Rep: CG1...    44   0.006
UniRef50_A5IYR9 Cluster: LicA; n=2; Mycoplasma|Rep: LicA - Mycop...    36   1.6  
UniRef50_A4J6T5 Cluster: Poly-gamma-glutamate synthesis protein ...    34   5.0  

>UniRef50_Q9VEW3 Cluster: CG10311-PA; n=5; Endopterygota|Rep:
           CG10311-PA - Drosophila melanogaster (Fruit fly)
          Length = 165

 Score = 43.6 bits (98), Expect = 0.006
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 510 HTSITYYLDEHDHVIEATXXXXXXXXXXXXXXXXWAVVFSHYLDVRDEEERGRYRKAPYR 689
           +T I +++D   +V+                   W VV+S Y ++ +E ERGRY K PYR
Sbjct: 107 YTGIVFFID--GYVLTGVLWLIFGLIVCAIMTYCWCVVYSEYANLSEENERGRYNKQPYR 164

Query: 690 R 692
           R
Sbjct: 165 R 165


>UniRef50_A5IYR9 Cluster: LicA; n=2; Mycoplasma|Rep: LicA -
           Mycoplasma agalactiae
          Length = 252

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 127 NYEIYYLSRKIISEQNEASSEMLLLCFYSDRIPDHCYPRHHTLIATIILIWTVKKHTVSF 306
           N+E+ Y    I S       E L L  Y +   +    RH  L+  ++++W   + TV F
Sbjct: 175 NFELAYF---IESANLNKEQEKLFLDSYGE-YDELFLLRHKMLVNYLVILWAYAQETVPF 230

Query: 307 STFIFDK---EFDKKLSDL 354
           ST I+++   ++DK+LS L
Sbjct: 231 STKIYEERLYKYDKELSQL 249


>UniRef50_A4J6T5 Cluster: Poly-gamma-glutamate synthesis protein
           (Capsule biosynthesis protein) precursor; n=1;
           Desulfotomaculum reducens MI-1|Rep: Poly-gamma-glutamate
           synthesis protein (Capsule biosynthesis protein)
           precursor - Desulfotomaculum reducens MI-1
          Length = 396

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 720 YGGVECLKIIFCKELCGIGHVLLRHARPSNG*IQLPKGRDISINI 586
           Y   E  + +FC E+ GI   +L +   +NG I LPKG+D ++++
Sbjct: 160 YRSAEDAQRVFCTEIKGIKIGILNYTESTNG-IPLPKGKDYAVDM 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,144,382
Number of Sequences: 1657284
Number of extensions: 14543084
Number of successful extensions: 30991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30972
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)