Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40178
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.61 
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    29   1.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   9.9  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 342 AFRLRHSKDNFNNKFMFHHLDLHTSDRRYKQASVMVDAAVGSAGYRFGNRLAD 500
           A ++ HS  +FN K    H+  HT + +Y    ++ D   G  G+    ++AD
Sbjct: 191 AEKMLHSIKDFNQKTTVFHM--HTRNNKYDTREIVDDIFFGGTGWAEPPKIAD 241


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 557 FYDVIVLIEVIGNRCVRILISKPIAKTIPSTT 462
           F D+ + ++V+G++C+  L S  I K + ST+
Sbjct: 93  FEDISLCMDVVGSKCIPTLQSTDIEKVVNSTS 124


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 372 FNNKFMFHHLDLHTSDRRYKQASVMVD---AAVGSAGYRFGNRL 494
           FN+   F   +L+TSD R++ ASV+ D   A  G   + F ++L
Sbjct: 212 FNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKL 255


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 255 DSHNHIDMDCQETHSLIQHIYL*QGIRQEAFRLRHSKDNFNNKFMFHHLD 404
           D+   +D     T SLI+++ L  G R+EA +L  ++     K    HLD
Sbjct: 26  DAIKDVDEASDHTISLIRNLLLDAGAREEAVQLIQNELEKQFKEREEHLD 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,174
Number of Sequences: 5004
Number of extensions: 65236
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)