Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40178
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       26   0.37 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.49 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 557 FYDVIVLIEVIGNRCVRILIS 495
           FY V+++I  IGN  V ILI+
Sbjct: 43  FYSVLMIISAIGNTTVLILIT 63


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 656 FFVTHVQVMAEYNCPKV 606
           F+  H Q+MA YNC ++
Sbjct: 234 FYYMHQQIMARYNCERL 250


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 YEIYYLSRKIISEQNEASSEMLLLCFY 210
           Y+I+  +R+I+ E+  A S +   C++
Sbjct: 223 YKIFCAARRIVLEERRAQSHLEAHCYF 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,352
Number of Sequences: 438
Number of extensions: 4850
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)