Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40177
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    56   3e-09
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    28   1.1  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   4.3  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   7.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    25   7.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.9  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 24/56 (42%), Positives = 38/56 (67%)
 Frame = +1

Query: 91  SNILQDSRFTKYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRGRPL 258
           SN++ D RF    SDPR+ ++ +   KVK+D+RF+ + +D+ FK   +VD+ GRPL
Sbjct: 17  SNVVADPRFQSVHSDPRFSRLKRGNFKVKVDERFKSLKEDKDFKTTASVDRYGRPL 72


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 387 SIDKIDPKTLNDKLTRGKLDKKIKTRL 467
           SI+ IDPKT+  K  R K  +KI + L
Sbjct: 83  SIEMIDPKTIEQKEARSKFMEKISSPL 109


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 351 GRFVKRPSTDDESIDKIDPKTLNDKLTRGKLDKKIKTRL 467
           G +VK P+T       I+   L DKL++GK+D  I + L
Sbjct: 200 GEWVKIPTTYAGGGRSIEDLDLVDKLSKGKVDLTIGSAL 238


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 KYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRGRPLMRL 267
           K+L   R  Q PKH  ++++D +     D   F+++ T+ +  + + R+
Sbjct: 488 KFLDQIRTSQGPKHTSEIRLDMQKTMQRDVSVFRMEETLQEGVKNIARV 536


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 22  NYICKGYKSNPFLFNRTKHLLKMSNILQDSRFTKYLSDPRYRQ-IPKHERK 171
           N + +  K + FL  R          + D    KY  DP+ +Q IP  ERK
Sbjct: 126 NLVYRDIKPDNFLIGRPSSRNANMVYMVDFGMAKYYRDPKTKQHIPYSERK 176


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 537 VAIQKMIVEWSMNGESWMLMLKLL 608
           + IQ +  E+S+  ++WMLML+ L
Sbjct: 28  LCIQGIPDEYSLRAKAWMLMLEFL 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,943
Number of Sequences: 5004
Number of extensions: 44039
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)