Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40177
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 46 2e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 31 0.83
12_01_0558 + 4521616-4522296 29 4.4
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 5.9
08_02_1088 + 24247781-24249043 28 5.9
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 7.7
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 28 7.7
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 KMSNILQDSRFTKYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYT-VDKRGR 252
K+ ++D RF +DPR+R + + E KV++D RF M D +F VDK GR
Sbjct: 89 KVRRAMEDERFAAARTDPRFRAMRRKEAKVELDSRFTSMLTDPRFSSSSAPVDKHGR 145
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 154 PKHERKVKIDKRFQPMFDDEKFKVKYTVD-KRGRPLMR 264
PK++R+ +I K++Q D +FKV V+ +R RP+ +
Sbjct: 996 PKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISK 1033
>12_01_0558 + 4521616-4522296
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 372 STDDESIDKIDPKTLNDKLTRGKLDKKI--KTRLLDLDID-YARGE 500
S DD+++ DP T ++ + +++ RLLDL D ARGE
Sbjct: 64 SEDDDAVTSYDPVTAAERAASASVSRRVGEAVRLLDLGRDLQARGE 109
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 614 PLQ*FQHQHPTLPIHAPFHDH 552
P + Q +HPT P+H PFH H
Sbjct: 210 PHEQIQWRHPT-PVHMPFHPH 229
>08_02_1088 + 24247781-24249043
Length = 420
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 348 PGRFVKRPSTDDESIDKIDPKTLNDKLTRGKLDKK 452
P P+T ESI K+D T+ + T GK KK
Sbjct: 156 PAAKADMPATGKESIAKVDAATVAKESTAGKTGKK 190
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 79 LLKMSNILQDSRFTKYLS----DPRYRQIPKHERKVKIDKRFQPMFDDEKFKVK 228
+LK +L S++ K L DPR++ IP H R+ +++ DE+ K K
Sbjct: 670 MLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEK 723
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 184 YQFLPFFHVSGFVCIVDHSN---IW*IDYLAKYYSSSID 77
Y+FL F GF+ + + N +W +++ +YSS D
Sbjct: 78 YKFLQFIQNQGFLIAISNENEIQVWNLEFRQLFYSSKWD 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,484
Number of Sequences: 37544
Number of extensions: 234632
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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