Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40177
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38113| Best HMM Match : HORMA (HMM E-Value=0)                       50   2e-06
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)                    30   1.5  

>SB_38113| Best HMM Match : HORMA (HMM E-Value=0)
          Length = 345

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 148 QIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRG 249
           +IP+ +RKVKID RF+ MF D+ F  KY VDKRG
Sbjct: 289 KIPRKQRKVKIDSRFERMFTDKSFTTKYFVDKRG 322


>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
          Length = 584

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 372 STDDESIDKIDPKTLNDKLTRGKLDKKIK 458
           ST+DE    I   T  +K+T GKL++K+K
Sbjct: 210 STEDEPKSSIKSDTSKEKVTEGKLEEKLK 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,452
Number of Sequences: 59808
Number of extensions: 306430
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)