Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40177
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15180.1 68417.m02328 SET domain-containing protein contains ...    29   2.1  
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    29   2.8  
At1g06840.1 68414.m00729 leucine-rich repeat transmembrane prote...    29   2.8  
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela...    29   3.7  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    29   3.7  
At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilas...    28   4.9  
At3g57200.1 68416.m06368 hypothetical protein                          28   4.9  
At5g03700.1 68418.m00330 PAN domain-containing protein contains ...    27   8.5  
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p...    27   8.5  
At2g07777.1 68415.m00893 expressed protein                             27   8.5  
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont...    27   8.5  

>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 49  NPFLFNRTKHLLKMSNILQDSRFTKYLSDPRYRQIPKHERKVKIDKR-FQPMFDDE 213
           +P++F ++ H  K S   +D R   Y   P Y +   H+R    D+R + P F ++
Sbjct: 452 SPYIFEKSSHARKRSP--RDRRHHDYRRSPSYSEWSPHDRSRPSDRRDYIPNFMED 505


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 154 PKHERKVKIDKRFQPMFDDEKFKVKYTVD-KRGRPLMR 264
           PK++R+V++ K++Q    D +FKV   V  ++ RP+ +
Sbjct: 77  PKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISK 114


>At1g06840.1 68414.m00729 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GB:BAA11869  GI:1389566 from [Arabidopsis thaliana]
          Length = 939

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 43  KSNPFLFNRTKHLLKMSNILQDSRFTKYLSD 135
           ++NP +F+R    +K SNIL DSRFT  ++D
Sbjct: 726 EANPPIFHRD---IKASNILLDSRFTAKVAD 753


>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
           contains weak similarity to mRNA inducible by sucrose
           and salicylic acid expressed in sugar-accumulating
           tobacco plants (GI:871487) [Nicotiana tabacum]
          Length = 183

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 465 LLDLDIDYARGEGVFLRIVLQKQRVAIQKMIVEWSMNG 578
           +LDL  + A GEG FL  +   QR+  Q+ ++E+  +G
Sbjct: 118 ILDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSG 155


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 127 LSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRG-RPLMRLQL 273
           +++P Y+   + E + + D+R Q  F DE+ + +Y ++  G RP  R ++
Sbjct: 101 VAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKI 150


>At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilase 1
           [Mus musculus] GI:3228668; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 307

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 435 GKLDKKIKTRLLDLDIDYARGEGVFLRIVLQKQRVAI 545
           G+L  ++ T ++  DID++  + V  ++ + KQRV+I
Sbjct: 269 GRLPDRVSTGIVVADIDFSLIDSVRTKMPIDKQRVSI 305


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 282 SSSQLKSH*WPSPFIYCVFNFELFIVKHGLKSFINFYLSF-MFRDLSVSWITQIFGESTI 106
           + S++ +  W S F Y   N+ELF+     K  +N  ++  M +D  + WI  +  +  I
Sbjct: 181 AKSRIWNETWLSSFFYKPCNYELFV-----KQSLNMEMAITMAQDAGMEWIIHLDTDELI 235

Query: 105 LQNITH 88
             + TH
Sbjct: 236 HPSGTH 241


>At5g03700.1 68418.m00330 PAN domain-containing protein contains
           Pfam profile: PF00024 PAN domain
          Length = 482

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 201 HGLKSFINFYLSFMFRDLSVSWITQIFGESTILQNITHLQ*MLSPVK*EWITF 43
           H  K F N  L  +     + W T   G+  IL+N ++LQ + +    EW +F
Sbjct: 102 HKTKLFFNGSLVIIDPSSRLEWSTHTNGDRLILRNDSNLQVVKTSTFVEWESF 154


>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
           protein annotation temporarily based on supporting cDNA
           gi|23452833|gb|AF543710.1|
          Length = 533

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 282 SSSQLKSH*WPSPFIYCVFNFELFIVKHGLKSFINFYLSF-MFRDLSVSWITQI 124
           + S++ +  W S F Y   N+ELF+     K  +N  ++  M RD  + WI  +
Sbjct: 195 AKSRIWNETWLSSFFYKPCNYELFV-----KQSLNMEMAIVMARDAGMDWILHL 243


>At2g07777.1 68415.m00893 expressed protein
          Length = 262

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 185 LSIFTFLSCFGICLYRGSLKYLVNRLS--CKILLI 87
           L IF  L  F ICL+R   +YL  R++  C + L+
Sbjct: 33  LIIFLILLVFSICLFRSLKQYLGKRMTQWCYLALV 67


>At1g67510.1 68414.m07690 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 719

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 82  LKMSNILQDSRFTKYLSD 135
           +K SNIL DS FT Y+SD
Sbjct: 538 VKPSNILLDSSFTPYISD 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,596
Number of Sequences: 28952
Number of extensions: 214085
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)