Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40176
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5H1H0 Cluster: UblB; n=1; Streptococcus uberis|Rep: Ub...    34   3.1  
UniRef50_Q5CQ75 Cluster: YprA. Lhr1/Ski2 family RNA SFII helicas...    33   7.3  

>UniRef50_A5H1H0 Cluster: UblB; n=1; Streptococcus uberis|Rep: UblB
           - Streptococcus uberis
          Length = 535

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/48 (29%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +2

Query: 488 FFLIPVKRVF*LMCFSLLTLEIVYVLKIIVQNVI-IVLKKMYRVKNMK 628
           + +I +K++  +    +LT+ ++ +  ++++NVI I LKK+Y++  MK
Sbjct: 226 YIIIYIKKLIFVFTNQVLTISVIIMALLVLKNVIYIFLKKVYKINEMK 273


>UniRef50_Q5CQ75 Cluster: YprA. Lhr1/Ski2 family RNA SFII helicase;
           n=2; Cryptosporidium|Rep: YprA. Lhr1/Ski2 family RNA
           SFII helicase - Cryptosporidium parvum Iowa II
          Length = 851

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 578 QNVIIVLKKMYRVKNMKSCHVSVANTLMSLEEILTNSPTSSINFKLPT 721
           ++VI VLK    +  +    VS +NT   L EIL N+    INF + T
Sbjct: 62  KDVIAVLKDKITITRISETQVSHSNTNFELNEILANARDYIINFNIGT 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,754,321
Number of Sequences: 1657284
Number of extensions: 7484004
Number of successful extensions: 15875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15870
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)