Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40176
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF040645-6|AAB94976.1|  301|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 577 AERNYCFKKNV*GKKYEVVSCFRRK 651
           AER  C+K+NV  +  E+V C R+K
Sbjct: 256 AERVGCYKRNVTARDTEIVKCLRKK 280


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 577 AERNYCFKKNV*GKKYEVVSCFRRK 651
           AER  C+K+NV  +  E+V C R+K
Sbjct: 256 AERVGCYKRNVTARDTEIVKCLRKK 280


>AF040645-6|AAB94976.1|  301|Caenorhabditis elegans Hypothetical
           protein F52C6.10 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 596 LKKMYRVKNMKSCHVSVANTLMSLEEILTNSPT 694
           + K Y+++N+K+  +S  NT+  ++  +T  PT
Sbjct: 251 IAKQYKMENLKNSCLSKVNTVRDIKAAMTGDPT 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,689
Number of Sequences: 27780
Number of extensions: 186199
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)