Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40176
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56390.1 68418.m07039 F-box family protein contains F-box dom...    30   1.8  
At3g12030.1 68416.m01492 expressed protein similar to membrane p...    28   7.4  

>At5g56390.1 68418.m07039 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 428

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 59  TDDIISIQPLPIFIEKKNYLISLLPLILDIFHEFYISLPTLETLRNTD 202
           +DD ++I  + +   K+  LI    L +D+ H+F I  P+LE L+  D
Sbjct: 192 SDDNVTILTVRVPSLKRLSLIQRAELEIDVPHDFVIDTPSLEHLKIVD 239


>At3g12030.1 68416.m01492 expressed protein similar to membrane
           protein GB:BAA86974 GI:6467175 from [Homo sapiens]
          Length = 196

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 533 SLLTLEIVYVLKIIVQNVIIVLKKMYRVKNMKSCHVSVANTLMSLEEILTNSPTSSINFK 712
           SL  + I +   ++ + +  +L  +YR  + KS   S+      LE + T +P+S ++ K
Sbjct: 16  SLTVVGISFCTALVCEAISWIL--IYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSIK 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,927
Number of Sequences: 28952
Number of extensions: 161258
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)