Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40175
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   7.9  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    25   7.9  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    25   7.9  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 158 SLFWLFEKSCDEFYD-SIVCLCYLLFIRLAAHPLRVVY 48
           +L WL      +  D S+VC  +  FI  ++HPL VVY
Sbjct: 191 ALSWLITWFAHDVSDISVVCRLFDFFI--SSHPLTVVY 226


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 15  SESRTLLWLEFIDNAKRMC 71
           ++S   LWLE ++NA+R+C
Sbjct: 151 NDSSHPLWLESLNNAQRLC 169


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 423 FRRALKYTRYCHY 461
           FRR L ++R+CHY
Sbjct: 2   FRRGLVFSRHCHY 14


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -3

Query: 257 ASKCLLFISNCNFAQKTLLNIIFSCNKTKQRNSSLFWLFEKSCDEFY 117
           A+ C+   +    + + L +I+ +C K  Q+NS++  L ++   E++
Sbjct: 90  AATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNV--LVDEQTKEYW 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,785
Number of Sequences: 5004
Number of extensions: 42582
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)