Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40175
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   8.4  
SB_59220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 254  SKCLLFISNCNFAQKTLLNIIFSCNKTKQRNSSLFW 147
            ++ +   S C +A+ T +   FSC    +R +++ W
Sbjct: 1367 TRMIALTSKCYYAEDTAMKAKFSCKGVSKRQNNMSW 1402


>SB_59220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 59  EEDVLPAL*IINNKDRQYYHKT 124
           EE  LP L +I+N D+ Y+H T
Sbjct: 43  EESKLPKLTVIDNSDQVYFHDT 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,835
Number of Sequences: 59808
Number of extensions: 286421
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)