Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40175
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote...    27   9.1  
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    27   9.1  

>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 559

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 212 KTLLNIIFSCNKTKQRNSSLFWLFEKSCDEFYDSIV 105
           K  L++IF C       S L W F ++   F D IV
Sbjct: 353 KRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIV 388


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 212 KTLLNIIFSCNKTKQRNSSLFWLFEKSCDEFYDSIV 105
           K  L++IF C       S L W F ++   F D IV
Sbjct: 330 KRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIV 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,009
Number of Sequences: 28952
Number of extensions: 196862
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)