Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40174
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 140 3e-34
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 140 3e-34
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 140 3e-34
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 54 2e-08
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 29 0.53
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 29 0.53
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.1
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.5
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 26 6.5
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 25 8.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 140 bits (338), Expect = 3e-34
Identities = 68/132 (51%), Positives = 83/132 (62%)
Frame = +3
Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK G RG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
D +TRVKLPSGAKKV + ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 642 VAMNPVEHPHGG 677
VAMNPV+HPHGG
Sbjct: 201 VAMNPVDHPHGG 212
Score = 107 bits (257), Expect = 2e-24
Identities = 49/71 (69%), Positives = 61/71 (85%)
Frame = +2
Query: 41 MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
MGRVIRAQRK +G +F +HT+ R GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 221 VHFRDPYKFKT 253
V FR+PY ++T
Sbjct: 60 VAFRNPYHYRT 70
Score = 29.9 bits (64), Expect = 0.40
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 676 GGNHQHIGKASTVKRRN 726
GGNHQH+G ++TV R++
Sbjct: 212 GGNHQHVGHSTTVPRQS 228
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 140 bits (338), Expect = 3e-34
Identities = 68/132 (51%), Positives = 83/132 (62%)
Frame = +3
Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK G RG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
D +TRVKLPSGAKKV + ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 642 VAMNPVEHPHGG 677
VAMNPV+HPHGG
Sbjct: 201 VAMNPVDHPHGG 212
Score = 107 bits (257), Expect = 2e-24
Identities = 49/71 (69%), Positives = 61/71 (85%)
Frame = +2
Query: 41 MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
MGRVIRAQRK +G +F +HT+ R GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 221 VHFRDPYKFKT 253
V FR+PY ++T
Sbjct: 60 VAFRNPYHYRT 70
Score = 29.9 bits (64), Expect = 0.40
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 676 GGNHQHIGKASTVKRRN 726
GGNHQH+G ++TV R++
Sbjct: 212 GGNHQHVGHSTTVPRQS 228
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 140 bits (338), Expect = 3e-34
Identities = 68/132 (51%), Positives = 83/132 (62%)
Frame = +3
Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK G RG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
D +TRVKLPSGAKKV + ++ + K R P RG
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
Query: 642 VAMNPVEHPHGG 677
VAMNPV+HPHGG
Sbjct: 201 VAMNPVDHPHGG 212
Score = 107 bits (257), Expect = 2e-24
Identities = 49/71 (69%), Positives = 61/71 (85%)
Frame = +2
Query: 41 MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
MGRVIRAQRK +G +F +HT+ R GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 221 VHFRDPYKFKT 253
V FR+PY ++T
Sbjct: 60 VAFRNPYHYRT 70
Score = 29.9 bits (64), Expect = 0.40
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 676 GGNHQHIGKASTVKRRN 726
GGNHQH+G ++TV R++
Sbjct: 212 GGNHQHVGHSTTVPRQS 228
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Frame = +3
Query: 324 LEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 503
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 504 KVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSN-VTAGPYVRGVAMNPVEHPHGG 677
+ + A + V++N++ + + RS + P VRG AMNP +HPHGG
Sbjct: 220 RKILDTSFA------TIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAMNPCDHPHGG 272
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 585 PAFKIGLSIRPPPATIPTMPLLLDGRPSWLQTVALLLYA 469
P K+GL+ PP + M L W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 29.5 bits (63), Expect = 0.53
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +3
Query: 405 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KL 584
+G ++A F + P RV L S + +C+Q L +VD L ++ +
Sbjct: 425 KGDFSQAIEEFTNSLSQLPAKHTKRVPLLSN-RSLCYQKVGDLKTCLQDVDELVDIIGEE 483
Query: 585 EGHTTSTRSNVTAGPYVRGV 644
+GH S R YV+ +
Sbjct: 484 KGHGESIRDKSMNDYYVKNM 503
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 185 IHDPGRGAPLAVVHFRDPYKFKTRRSSSLLPKALH 289
IH P R P +++ PY++K +SSL K +H
Sbjct: 41 IHVP-RPNPNQIINLYPPYEYKYNNTSSLCTKYIH 74
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -2
Query: 646 ATPRTYGP----AVTFDLVLVVCPSSFQNRFVNTSTSSN--NTDHAS 524
ATPRT+ P ++ + + V PS ++ ++S+SS+ +T H S
Sbjct: 23 ATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSISTSHDS 69
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 223 TLPRSIQVQDKKELFIAPEGSTQANLFI 306
+LP+S+ +QD L+I P+ T +++ +
Sbjct: 204 SLPKSLSLQDMTLLYIGPDSPTLSSILM 231
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +3
Query: 270 CSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGT---------IVCNLEEKMGXRGRLAR 422
C R L+ ++ CGK L V +V + GT I+ N+ K RG ++R
Sbjct: 346 CIRNLFRKTWIICGKSTRLPV-SVFQIALQVAGTDLPKLHVEAILANMISKGYMRGYISR 404
Query: 423 ASGNFATVI 449
NF TV+
Sbjct: 405 ---NFETVV 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,978
Number of Sequences: 5004
Number of extensions: 69496
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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