Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40174
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      138   6e-33
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.24 
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    29   2.9  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.9  
05_03_0325 + 12438538-12438545,12438829-12439099,12439146-124391...    29   3.9  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   5.1  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    28   6.8  
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778...    28   9.0  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  138 bits (333), Expect = 6e-33
 Identities = 66/132 (50%), Positives = 84/132 (63%)
 Frame = +3

Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
           +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +G RG  ARASG++A VI HNP
Sbjct: 82  MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141

Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
           D   +R+KLPSGAKK+   +  A    +           K        R      P VRG
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201

Query: 642 VAMNPVEHPHGG 677
           VAMNPVEHPHGG
Sbjct: 202 VAMNPVEHPHGG 213



 Score =  112 bits (269), Expect = 3e-25
 Identities = 51/73 (69%), Positives = 60/73 (82%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIRAQRKGAGSVF SHT  R G  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRR 259
           V FR P+++K ++
Sbjct: 61  VTFRHPFRYKHQK 73



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 676 GGNHQHIGKASTVKR 720
           GGNHQHIG ASTV+R
Sbjct: 213 GGNHQHIGHASTVRR 227


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 547 WRWTY*QTYFESWKGIPQVQG 609
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/63 (36%), Positives = 29/63 (46%)
 Frame = +3

Query: 387 EEKMGXRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLT 566
           EEK+     L    G    +IG N   K T +KL  G +K     T+   VLL E +VL 
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499

Query: 567 NLF 575
           N F
Sbjct: 500 NYF 502


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 425 LWKLRHCDWT 454
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>05_03_0325 +
           12438538-12438545,12438829-12439099,12439146-12439156,
           12439353-12439492,12439638-12439648
          Length = 146

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +3

Query: 273 SRRLYTGQFVYCGKKATLEVGNVMPVGAMPE---GTIVCNLEEKMGXRGRL-ARASGNFA 440
           S R+   Q  +CG  ++  +    PVG       G+  C      G +  L A A G+  
Sbjct: 34  SSRVEQKQLAFCGTVSSASIDGAKPVGGRRRNIVGSFCCGRWFGEGQQKVLDAAARGSNL 93

Query: 441 TVIGHNPDAKRTRVKLPSGAKKVCHQATEAWSVL 542
            ++G +  +K+  +K  S  KK C +  E +SV+
Sbjct: 94  NIVGIS--SKKNALK--SMVKKPCKEEAETYSVV 123


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 547 WRWTY*QTYFESWKGIPQVQG 609
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_01_0484 -
           3558941-3559303,3559439-3559560,3560596-3560743,
           3560853-3561491,3562154-3562450,3562553-3563407,
           3564363-3564545,3565041-3565118,3565762-3565974,
           3566075-3566238,3566357-3566445,3566761-3566891,
           3566980-3567148,3567255-3567327,3567525-3567606,
           3567677-3567808,3568743-3568818,3568965-3569065,
           3569446-3569636,3569738-3569912,3570604-3570854,
           3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 395 FLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPSGAMKS 261
           FL +  H   LR +   HH S    C L  IN +  + PS ++KS
Sbjct: 349 FLIEWRHENALRTNEAVHHFSEEIVCVLPVINLV--ISPSKSVKS 391


>02_02_0587 +
           11875678-11877234,11877606-11877608,11877755-11877823,
           11878605-11878719,11879139-11879248
          Length = 617

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 637 RTYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQT 506
           R  G +     + ++  S    R VNT+    NTDH  +  WQT
Sbjct: 167 RKNGVSPDISTLEIIIDSLIAARHVNTAIQLINTDHFGLGVWQT 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,359,405
Number of Sequences: 37544
Number of extensions: 505648
Number of successful extensions: 1323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)