Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40174
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 6e-37
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 127 1e-29
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 37 0.015
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 31 1.3
SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79) 29 3.0
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7) 28 6.9
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 151 bits (366), Expect = 6e-37
Identities = 73/132 (55%), Positives = 89/132 (67%)
Frame = +3
Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK G RGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
+ KRTRVKLPSG KKV + A ++ + K ++ P VRG
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRG 201
Query: 642 VAMNPVEHPHGG 677
VAMNPVEHPHGG
Sbjct: 202 VAMNPVEHPHGG 213
Score = 127 bits (306), Expect = 1e-29
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +2
Query: 41 MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
MGRVIR QRKGAGS+F SHTK R GA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 221 VHFRDPYKFKTRR 259
V FRDPY++K R+
Sbjct: 61 VVFRDPYRYKLRK 73
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 676 GGNHQHIGKASTVKR 720
GGNHQHIG STV+R
Sbjct: 213 GGNHQHIGHPSTVRR 227
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 127 bits (306), Expect = 1e-29
Identities = 56/83 (67%), Positives = 67/83 (80%)
Frame = +3
Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK G RGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 462 DAKRTRVKLPSGAKKVCHQATEA 530
+ KRTRVKLPSG KKV + A
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/31 (80%), Positives = 29/31 (93%)
Frame = +2
Query: 167 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRR 259
GVVK+IIHDPGRGAPLAVV FRDPY++K R+
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRK 31
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +3
Query: 318 ATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNPDAKRTRVKLPSG 497
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 498 AKK 506
+K
Sbjct: 168 VEK 170
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 306 NKQIGLCRAFGSNEELLLVLNLYGSRKCTTAKG-APLPGSWIISLTTPLMYP 154
+ + L R +GS + LLL N + T G AP GS + + TPL P
Sbjct: 242 SSNLALSRKYGSRDNLLLDFNHLQDKPSTILSGDAPQTGSDLSDVDTPLSTP 293
>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 634 TYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNT 536
TY + FD VL +S +NR +T T++NNT
Sbjct: 268 TYSKSKQFDQVLTTFENSSRNRVNDTLTNNNNT 300
>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
Length = 696
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 634 TYGPAVTFDLVLVVCPSSFQNRFVNTSTSSNNT 536
TY + FD VL +S +NR +T T++NNT
Sbjct: 268 TYSKSKQFDQVLTTFENSSRNRVNDTLTNNNNT 300
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 473 TLSIRIVSNHSGEVSRGTCQTTSXSHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 300
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 299 KLACV 285
CV
Sbjct: 136 NQRCV 140
>SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7)
Length = 365
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 161 CIHDVQRNLKSEV*ERLISSSCEKRKLNRHPYAEHVLHD 45
C+HD++ K + + SCEK K+NR+ + V H+
Sbjct: 105 CVHDIKLAKKKDA----VLVSCEKHKINRNKDIKGVQHN 139
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Frame = -2
Query: 394 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SL-------REQ*RAPSCLELVW 236
F+S L T +P+ P G+TF T +V F +NW + + +E R S LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 235 IAEVYNSQRCTS--TRVMD 185
I + + S TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 GNVMPVGAMPEGTIVCNLEEKMGXRGRLAR-ASGNFATVIG 452
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 405 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVCHQATEAWSVLL 545
RG A S +V+G P A+ R + PSG + C+ E V +
Sbjct: 202 RGPGADESAPLDSVVGRAPIARGRRAQEPSGDRPTCYNCGERGHVAI 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,350,913
Number of Sequences: 59808
Number of extensions: 567408
Number of successful extensions: 1397
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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