Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40174
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   149   2e-36
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.030
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical...    28   8.0  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    28   8.0  
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  149 bits (362), Expect = 2e-36
 Identities = 68/132 (51%), Positives = 89/132 (67%)
 Frame = +3

Query: 282 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGXRGRLARASGNFATVIGHNP 461
           ++TGQF++CG KA +++GN++PVG +PEGT +CN+E K G RG +ARASGN+ATVI HNP
Sbjct: 82  MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNP 141

Query: 462 DAKRTRVKLPSGAKKVCHQATEAWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGPYVRG 641
           D K+TR++LPSGAKKV      A   L+           K        ++   + P VRG
Sbjct: 142 DTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRG 201

Query: 642 VAMNPVEHPHGG 677
           VAMNPVEHPHGG
Sbjct: 202 VAMNPVEHPHGG 213



 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/83 (68%), Positives = 68/83 (81%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKKRXGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGR IR QRKGAG +F SH K R GA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 221 VHFRDPYKFKTRRSSSLLPKALH 289
           + FRDPYK+KT +++ +  + +H
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMH 83



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 676 GGNHQHIGKASTVKR 720
           GGNHQHIG  STV+R
Sbjct: 213 GGNHQHIGHPSTVRR 227


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 333 GNVMPVGAMPEGTIVCNLEEKMGXRGR-LARASGNFATVIGHNPDAKRTRVKLPSGAKKV 509
           GN  P+G++  GT++ ++E           +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 510 CHQATEAWSVLLLEVDVLTNLF*KLEGH 593
            H+   A    L   D+   +F   + H
Sbjct: 218 LHRTCMATVGRLSHADIDGKIFGSAQMH 245


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 447 IGHNPDAKRTRVKLPSGAKKVCHQATEAWSVLLLE 551
           IGH  D +RTR  LP+G KKV  Q  +   +LL++
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 152 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRRSSSLLPKALH 289
           HG    +   ++H P R A L ++H +     KT  +S+++ +A++
Sbjct: 283 HGVFTTLTMIMVHTPYRHATLEMLHLKSKRSMKTSNNSNIMLQAVN 328


>AC024754-1|AAK71405.1|  394|Caenorhabditis elegans Hypothetical
           protein Y32G9B.1 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 555 PPPATIPTMPLLLDGRPS 502
           PPP+T PT+P L  G PS
Sbjct: 93  PPPSTFPTLPPLTFGTPS 110


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 152 HGYIKGVVKDIIHDPGRGAPLAVVHFR 232
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 152 HGYIKGVVKDIIHDPGRGAPLAVVHFR 232
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical
           protein Y60A3A.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 152 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRRSS 265
           HG    +V  I+H P R A  +++H +     KT  +S
Sbjct: 280 HGVCTTLVMIIVHKPYRQATFSILHLKSVRPLKTENNS 317


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 473 TLSIRIVSNHSGEVSRGTCQTTSXSHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKL 294
           TL++    N SG+    TC +TS +H + ++   G L  +S++ H S + +   S  N +
Sbjct: 220 TLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH-SKW-AVSNSQTNPI 276

Query: 293 ACVEPSGAMKS 261
            C E     KS
Sbjct: 277 VCFEDMNRQKS 287


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 AICTWCCHEPCRASSRWVVTIN 691
           AI T CCH+ C  +S+  +T+N
Sbjct: 219 AIGTKCCHQSCSGTSQRQITLN 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,907
Number of Sequences: 27780
Number of extensions: 411879
Number of successful extensions: 1067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)