Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40174
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 476 KSKATVWSQEGLPSSNRGMVGIVAGGGRIDKP 571
           K+  T+   +G+PS+   + G    GGR+ KP
Sbjct: 76  KTFVTILRYDGVPSTLNVISGKTGKGGRLLKP 107


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 398 HFLFKIAHNGTLRHSSNRHHI 336
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 398 HFLFKIAHNGTLRHSSNRHHI 336
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 398 HFLFKIAHNGTLRHSSNRHHI 336
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 398 HFLFKIAHNGTLRHSSNRHHI 336
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 680 PPTVRMLYRVHGNTTYIWPSSYV*PCTCGMP 588
           PPT+   Y  + N+ Y   + +  PCT   P
Sbjct: 369 PPTLSESYSSYVNSMYASGAQFATPCTPSPP 399


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 447 IGHNPDAKRTRVKLPSGAKKVCHQATEAWSVLLLE 551
           IG+  + K+TR  LP+G +KV     +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 345 ASHFQLQELLSFHNKQIGLCRAFGSNEELLLVLNLYGSR 229
           AS   L+E+   +N    L +   +  E LLVLNL G+R
Sbjct: 282 ASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNR 320


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 558 VLTNLF*KLEGHTTSTRSNVTAGPYVRGVAMNP 656
           ++TNL+ KLE +  + R NV+    VR + + P
Sbjct: 70  LITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPP 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,013
Number of Sequences: 438
Number of extensions: 4890
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)