Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40173
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 85 2e-17
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 29 0.80
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 4.3
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 5.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 7.5
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.9
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 25 9.9
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 25 9.9
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 25 9.9
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.9
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 84.6 bits (200), Expect = 2e-17
Identities = 41/69 (59%), Positives = 49/69 (71%)
Frame = +3
Query: 258 TISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVN 437
TISAPHMHA AL++L+ L PG ALD+GSGSGYL A MA M+ G V GIEHI +LV
Sbjct: 58 TISAPHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIEHIPQLVE 117
Query: 438 LATKNIQND 464
+ KN+ D
Sbjct: 118 TSKKNLLKD 126
Score = 59.3 bits (137), Expect = 7e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 509 DGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDG 688
DGR+G + + AIHVGA+A LPQ L+DQLK G++++P+G Q++ ++K + G
Sbjct: 148 DGRMGTSEDEKFDAIHVGASASELPQKLVDQLKSPGKILIPIGTY--SQNIYLIEKNEQG 205
Query: 689 TTTVKKLMSV 718
+ + L V
Sbjct: 206 KISKRTLFPV 215
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 109 TNNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSQQSALP 273
++N L+++L + + + AM A R YCP SPY DSPQSIG+ + P
Sbjct: 8 SSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTISAP 62
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 751 IGAPCQLMEHNHTHQFLYSCCSILCFINLSQMLFTTLRPYRN 626
+ P +L N H +SCCS++ NL L L+ Y N
Sbjct: 1768 LNLPLELFSEN-IHTLYFSCCSMIAKENLDDQLRELLKNYFN 1808
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 303 KNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLS 482
K L + L+VG G+G LT ML + +V+ +E + TK +Q P
Sbjct: 45 KADLKQSDTVLEVGPGTGNLT---VRMLEKARKVIAVEMDPRMAAEITKRVQG-TP---K 97
Query: 483 SERIKLVVGMVV 518
+++++V+G V+
Sbjct: 98 EKKLQVVLGDVI 109
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 390 ETGRVVGIEHISELVNLATKNIQNDNPSLLSSE-RIKLVVGMVVSVIHLKPLTVQFMSGL 566
E GR + ++H++ L + +K ++ + SLL + RI+++V +V L PL+ QF+ L
Sbjct: 1478 EIGRKL-LQHLNVLSD--SKVLETASLSLLKTNPRIEIIVSLVNVFRDLPPLSAQFLGDL 1534
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 692 LFHPVLYQPESNVVHHPQALQELLA--SLPVSIDQLELVVKWELQ 564
L P+ +P S V +P + + + LP+ ++Q VV+WE +
Sbjct: 303 LDEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFK 347
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 736 QLMEHNHTHQFLYSCCSILCFINLSQMLFTTLRPY 632
QL + +T F+ SC + F L+ +L T + PY
Sbjct: 379 QLKKPRYTVCFVVSCIFVSIFDTLTVLLLTWINPY 413
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 719 SHSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVS 603
SH+ +LQ P+ PE + VH P+A + + LP S
Sbjct: 79 SHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSS 117
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 7.5
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +3
Query: 180 NASC*SEELLSFFTIPGLSSIYWILATI--SAPHMHAHALEKL--KNQLV-PGEKALDVG 344
N S S LL F++ P + L ++ SA + +EK+ ++QL PG+ +D+G
Sbjct: 24 NNSLFSSCLLRFYSNPPKKTKKNTLISLRKSAETANEKFIEKINKEHQLFKPGQIVVDLG 83
Query: 345 SGSGYLTACMAMMLGETGRVVGIEHI 422
G + A +G GRV+ + I
Sbjct: 84 CAPGIWSTIAARHVGLFGRVIACDII 109
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 217 SPYQDSPQSIGFSQQSALPT 276
S DSPQS G S S+LPT
Sbjct: 297 SAVADSPQSTGSSVSSSLPT 316
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.9
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 GLSSIYWILATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGR-V 404
G+S + + L I P+ H N L G +++ SGS L C A + E R V
Sbjct: 500 GISVVVFALMVILRPYATKHM-----NTLHIGVALMNLISGSFILVMCQAFYVEELARQV 554
Query: 405 VGI 413
+GI
Sbjct: 555 IGI 557
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 321 GEKALDVGSGSGYLTACMAMM 383
G+K LD+G G G L+ MA +
Sbjct: 78 GKKILDIGCGGGILSESMARL 98
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 611 PVSIDQLELVVKWELQPRHELHCKG 537
P++ + +LVV++E+ P L+C G
Sbjct: 110 PINEPEKDLVVQYEVNPEEGLNCGG 134
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 463 SFWMFLVAKFTSSDICSIPTTLPVSPNIMAIQAVR*PDPEPTSKAFS 323
SF LV K + D+ P S I + + P PEPT A S
Sbjct: 862 SFNKPLVEKESKQDVSDTSDRSPFSFKAFGIDSKKSPTPEPTEMAES 908
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,151
Number of Sequences: 5004
Number of extensions: 77460
Number of successful extensions: 238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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