Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40173
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 102 4e-22
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715... 85 6e-17
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 34 0.16
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 33 0.21
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 33 0.37
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 31 0.85
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 30 2.0
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 30 2.6
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 29 3.4
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 29 4.5
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 4.5
02_05_0067 + 25557975-25558553 29 4.5
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 29 6.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 6.0
09_06_0083 + 20753191-20754480 28 7.9
09_04_0540 - 18420517-18420822,18420903-18421037,18421118-184212... 28 7.9
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 7.9
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737 28 7.9
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 28 7.9
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 102 bits (244), Expect = 4e-22
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = +3
Query: 255 ATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELV 434
ATISAPHMHA LE LK+ L PG ALDVGSGSGYLTAC AMM+G GR VGIEHI ELV
Sbjct: 118 ATISAPHMHATCLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELV 177
Query: 435 NLATKNIQ 458
+T+N+Q
Sbjct: 178 AASTENVQ 185
Score = 87.0 bits (206), Expect = 2e-17
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +2
Query: 509 DGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDG 688
DGRLG+P +APY AIHVGAAAP +PQ L+DQLK GGR+++PVG Q L VDK DG
Sbjct: 204 DGRLGWPDDAPYDAIHVGAAAPEIPQPLVDQLKTGGRMVIPVG--SYFQELQVVDKNADG 261
Query: 689 TTTVKKLMSV 718
+ TV+ SV
Sbjct: 262 SVTVQNDASV 271
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +1
Query: 115 NVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPS--SPYQDSPQSIGFSQQSALP----T 276
N L+ L+ G +++D VA M ++DR + +PY DSP IG++ + P T
Sbjct: 69 NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTPYTDSPMPIGYNATISAPHMHAT 128
Query: 277 CMRM 288
C+ +
Sbjct: 129 CLEL 132
>08_02_1558 +
27870327-27870332,27870890-27871163,27871438-27871515,
27871753-27871917,27872353-27872603
Length = 257
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = +2
Query: 509 DGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDG 688
DGR G+P APY AIHVGAAAP +PQALI+QLKPGGR+++PVG Q L VDK QDG
Sbjct: 175 DGREGWPELAPYDAIHVGAAAPQIPQALIEQLKPGGRMVIPVGTM--FQELKVVDKNQDG 232
Query: 689 TTTVK 703
+++
Sbjct: 233 KVSIR 237
Score = 70.9 bits (166), Expect = 1e-12
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 26/94 (27%)
Frame = +3
Query: 255 ATISAPHMHAHALEKLKNQLVPGEKALDVGSG--------------------------SG 356
ATISAPHMHA LE L+ L PG +ALDVGSG +G
Sbjct: 63 ATISAPHMHASCLELLEKHLQPGMRALDVGSGFEMQKCLPTYVEKTIFSFISQLFREGTG 122
Query: 357 YLTACMAMMLGETGRVVGIEHISELVNLATKNIQ 458
YLTAC A+M+G GR VG+EHI ELV + +NI+
Sbjct: 123 YLTACFAIMVGPEGRAVGVEHIPELVTSSIENIK 156
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 88 WHGEATETNNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCP--SSPYQDSPQSIGFSQQ 261
W A++ N ++ L+ GIIKS VA M +DR + P +SPY DSP IG++
Sbjct: 6 WSSGASDKNKA-MVEQLQRYGIIKSSKVAQVMETIDRGLFVPPGASPYFDSPMPIGYNAT 64
Query: 262 SALP 273
+ P
Sbjct: 65 ISAP 68
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 336 DVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQ 458
D+G+GSG + +A MLG GRV + +++A N+Q
Sbjct: 183 DLGTGSGAIAVAVARMLGPEGRVFATDVSEVAIDVARLNVQ 223
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 309 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQ 458
Q++ ++ ++VG +GY + +A+ L E+GR+V E + +A K Q
Sbjct: 151 QILGAQRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQ 200
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 309 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQ-NDNPSLLS 482
+LVPG L+ G+GSG LT +A + GRV + + A ++ + ND S+++
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNDLTSIIT 178
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 309 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 488
+LVPG L+ G+GSG LT +A + GRV + + A ++ + + + + +
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITV 179
Query: 489 RIKLVVG 509
++ + G
Sbjct: 180 AVRDIQG 186
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 321 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 488
G K +DVG G G L+ +A M G T V GI+ + + + +A + +D PS S E
Sbjct: 70 GLKVIDVGCGGGILSEPLARM-GAT--VTGIDAVDKNIKIARVHAASD-PSTASIE 121
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 471 LGCHFGCFWLPNSQVLIYVLFQLPCQFLLTSWP 373
+G H G +WL ++ +++ LP + L + WP
Sbjct: 221 VGSHDGAWWLASNMLILLWFVGLPIRVLASDWP 253
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +3
Query: 312 LVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSER 491
L+ G LDVG G+G L+ A RV+ ++ +++V++AT+ +++ L E
Sbjct: 289 LMNGATVLDVGCGTGILSLFAAK--AGASRVIAVDGSAKMVSVATEVAKSN--GFLYDEN 344
Query: 492 IKLVV---GMVVSVIHLK 536
+++ V++V+H K
Sbjct: 345 MEMQQKRDTQVITVVHTK 362
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = -1
Query: 734 VNGT*SHSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVSIDQLE 588
+ G+ SS+S Q+L +PV+ Q N++ PQ++ +LL P + + +E
Sbjct: 391 LGGSPDSSSLS-QILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLME 438
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 545 SAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEG 646
+++ +G+AAP P A I + PG + P+GP+G
Sbjct: 500 ASVPIGSAAPLGPVAPIGPVSPGP--VAPLGPDG 531
>02_05_0067 + 25557975-25558553
Length = 192
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 700 KEIDECDYVPLTDKEHQYRP 759
K +DECD + DKEH Y+P
Sbjct: 139 KVVDECDSLHGCDKEHAYQP 158
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 202 NYCPSSPYQDSPQSIGFSQQSALPTCMRM 288
NY P + S +S G+SQ S L C+R+
Sbjct: 823 NYAIKEPTEASEESAGYSQPSILLCCLRL 851
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 249 ILATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGI 413
+LA ++A H++ E L+ L+ + D G +G+L A +A GRV G+
Sbjct: 10 LLARVAANHLYLGQFEALRAALLSLRRRADPGLAAGFLRAVVA----AGGRVPGV 60
>09_06_0083 + 20753191-20754480
Length = 429
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 539 PYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGG 649
P + V A +P LP PGG + P P GG
Sbjct: 294 PLPPVDVPALSPPLPHGKTPSGAPGGIALPPAAPAGG 330
>09_04_0540 -
18420517-18420822,18420903-18421037,18421118-18421262,
18421384-18421463,18421573-18421683
Length = 258
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 309 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIE 416
+L+ + A++VG +GY A+ L + G++V I+
Sbjct: 82 ELISAKNAIEVGVFTGYSLLATALALPDDGKIVAID 117
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 703 LYSCCSILCFINLSQMLFTTLRPYRNY 623
L+ C + CFI L F TLR Y Y
Sbjct: 832 LFLICGVACFIALLIFFFRTLRQYFRY 858
>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
Length = 767
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 429 LVNLATKNIQNDNPSLLSSERI-KLVVGMVVSVIHLKPLTVQFMSG 563
LV K I+ +N + RI KL +V+++IHLKP ++ +G
Sbjct: 663 LVKKLKKIIEANNKNTADCLRIVKLACQVVIAIIHLKPSCIKDFNG 708
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 560 GAAAPTLPQALIDQLKPGG-RLIVPVGPEGGEQ 655
GAA+P LP D L+PGG R + G G+Q
Sbjct: 314 GAASPRLPGCRRDALRPGGWRGVARWGAAAGQQ 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,099,270
Number of Sequences: 37544
Number of extensions: 515586
Number of successful extensions: 1428
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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