Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40173
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-19
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      67   2e-11
SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)                     50   2e-06
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  43   3e-04
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   43   3e-04
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)           37   0.023
SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        33   0.28 
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                     30   2.0  
SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       30   2.6  

>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 43/71 (60%), Positives = 51/71 (71%)
 Frame = +2

Query: 509 DGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDG 688
           DGR G+ +  P+ AIHVGAAAPTLP+ L++QLKPGGR+I+PVGPE   Q L Q DK  DG
Sbjct: 151 DGRKGHAAGGPFDAIHVGAAAPTLPEELLEQLKPGGRMIIPVGPEARNQTLEQYDKMPDG 210

Query: 689 TTTVKKLMSVI 721
               K LM VI
Sbjct: 211 KIVKKNLMGVI 221



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +3

Query: 384 LGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVG 509
           +GE G+V GI+HI +LV  A  NI+  NP LLS ++++L+VG
Sbjct: 109 VGEKGKVYGIDHIDQLVTEAKNNIKKGNPELLSQKKVELIVG 150



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +1

Query: 136 LRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIG 249
           L  NG++KSD V  A+  VDRK+Y   +P+ D+PQ IG
Sbjct: 65  LTANGVLKSDRVEAALRKVDRKHYSKLNPFMDAPQPIG 102


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/53 (56%), Positives = 41/53 (77%)
 Frame = +3

Query: 351 SGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVG 509
           SGYLTA MA+M+G+TG+VVGI+HI ELV+++ KN+   N +LL   R+ LV G
Sbjct: 2   SGYLTAVMAIMVGKTGKVVGIDHIQELVDMSRKNVLKGNANLLEENRLILVTG 54


>SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)
          Length = 69

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +3

Query: 384 LGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVG 509
           +GE G+V GI+HI +LV  A  NI+  NP LLS ++++L+VG
Sbjct: 1   VGEKGKVYGIDHIDQLVTEAKNNIKKGNPELLSQKKVELIVG 42



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +2

Query: 509 DGRLGYPSEAPYSAIHVGAAAPTLPQ 586
           DGR G+ +  P+ AIHVGAAAPTLP+
Sbjct: 43  DGRKGHAAGGPFDAIHVGAAAPTLPE 68


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 42/67 (62%)
 Frame = +3

Query: 261 ISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNL 440
           +SAP +++  +E L  +L  G   L++GSG+GYL+  + +++G +G   G+E   ++V+ 
Sbjct: 63  LSAPCIYSEVMECL--ELEEGLSFLNLGSGTGYLSTMVGLIIGPSGTNHGVELFEDVVDF 120

Query: 441 ATKNIQN 461
           A   +Q+
Sbjct: 121 AHSKLQH 127



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 112 NNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSQQS 264
           +N +L+ NL+  G IK+  V      VDR +Y P    + + + + + Q++
Sbjct: 10  DNNELVENLKEAGYIKTPKVEQVFREVDRCDYFPEGAEEHAYKDLAWKQKN 60


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +3

Query: 261 ISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNL 440
           +SAPHM+A  LE L   L PG   L+VGSG+GY +  +  ++       G+E   +LV  
Sbjct: 51  MSAPHMYAGVLEAL--DLCPGLSFLNVGSGTGYFSCLVGYIIKRNSINHGVEIRKDLVEF 108

Query: 441 A 443
           A
Sbjct: 109 A 109


>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
          Length = 462

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 282 AHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIE 416
           AH + ++ +Q V  EK LD+GSG GYL+  +A+  G T  V G++
Sbjct: 135 AHVVNQIASQ-VKAEKVLDLGSGKGYLSQALALDYGLT--VTGVD 176


>SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +3

Query: 309 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 449
           + + G + LD+GSGSG     ++ ++GE G + G++   E +++A K
Sbjct: 11  ECLDGCRILDLGSGSGRDCYVLSKLVGEEGFITGVDMTPEQLDIANK 57


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 327 KALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 449
           + LD+G GSG     ++ ++GE G V G++   E V++A K
Sbjct: 17  RVLDLGCGSGRDCFILSKLVGEKGFVTGVDMTPEQVDIANK 57


>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 251 SRNNQRSPHACACIRKVKKPVGTRRKSL 334
           SR ++ SPH   CI  VK+P+GT  + +
Sbjct: 589 SRKSRLSPHIAPCIGYVKEPLGTLAREM 616


>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +3

Query: 294 EKLKNQLVPG------EKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKN 452
           +K+ NQ+ P       +  LD+G G+G +T  MA        ++GI+     V LA  N
Sbjct: 84  KKVANQIFPSLPFATAKFVLDLGCGTGDVTGAMAANFSNDASIIGIDPDKYRVELAKSN 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,554,874
Number of Sequences: 59808
Number of extensions: 576810
Number of successful extensions: 1517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)