Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40172
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 123 3e-29
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 52 9e-08
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 46 6e-06
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 29 0.76
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 4.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 7.1
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 7.1
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 7.1
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 9.4
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 9.4
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 9.4
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 123 bits (296), Expect = 3e-29
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 MQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDN-RHGHI 433
MQ+CNL LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKMEE+ +D HGHI
Sbjct: 14 MQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEEEPKDGIPHGHI 73
Query: 434 TSLAVKRSHRRLGLAQKLMNQASLAWLNAF 523
TS++V RS+R LGLA++LM Q+ A + +
Sbjct: 74 TSVSVMRSYRHLGLAKRLMVQSQRAMVEVY 103
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +1
Query: 508 MVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAVD 687
MVE + AKY+SLHVRKSNRAA++LY ++L F + IE KYYADGEDAY+M +D S D
Sbjct: 99 MVEVYGAKYMSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGEDAYAMHKDFSTLKFD 158
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 52.0 bits (119), Expect = 9e-08
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +2
Query: 251 YDMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDGEDNRH 424
+ + NL L E + + +Y + WP L V E + ++GY++ K E G++ H
Sbjct: 13 FSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTGKE-WH 71
Query: 425 GHITSLAVKRSHRRLGLAQKLMN 493
H+T++ V + RRLGLA+ +M+
Sbjct: 72 THVTAITVAPNSRRLGLARTMMD 94
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 46.0 bits (104), Expect = 6e-06
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +2
Query: 248 PYDMQHCNLLC------LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDG 409
PY Q+ +C L E Y Y Y WP+ S+VA D +G V+ K +
Sbjct: 6 PYSHQYLKDICQLIQKDLSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHR 64
Query: 410 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASL 505
G+I LA+ + +R G+A KL QASL
Sbjct: 65 GTTLRGYIAMLAIVKEYRGQGIATKL-TQASL 95
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 29.1 bits (62), Expect = 0.76
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +1
Query: 541 LHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYS------MMRDLSAFAVDNKTDS 702
L + S +AAL LY ++ + +Y+ DG + S + R LSA ++ + +DS
Sbjct: 434 LTLTDSLQAALTLYKTAVFEAFENLAQQYFTDGVEMRSVRKSSDLRRSLSAASLSSLSDS 493
Query: 703 MRQII*KSNLNQAINIT 753
R+ +N Q+++IT
Sbjct: 494 SRRSSSAANPFQSMSIT 510
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 335 GAKKVHGRSNISSDSSLADTISC 267
G K VHG N++S +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 430 VTMTIILTVLFHFCQNISNNMS 365
+ +I+LT+LF+F N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 147 TYHLVVLEQIEIWINSTSKQCTNFKI*LIGEVHKIKSLEYLL*PNFLKY 1
T H +V + +W+ S S Q T + ++ V K S+E LL P K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 2 YFKKFGYSRYSKDLIL*TSPI 64
YF++FGY+ Y L+L +PI
Sbjct: 343 YFRRFGYNDYQLYLLLSCAPI 363
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 466 IRISSETHESGITCMVECFQAKYVSLH----VRKSNRAALNLYTNSLGF 600
IR ++++ E+G +C+ Q++ S + ++K N A +++T S+ +
Sbjct: 223 IRYTNKSSETGFSCLPSALQSQLQSFNYPPSLKKLNDAKAHVFTFSMNY 271
>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 87
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 687 INCKSTQISH--HGIRIFSISIVLWLNF 610
I KS+ H HGI IFS SI L+L F
Sbjct: 51 IGVKSSWSRHLIHGINIFSFSISLFLIF 78
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 697 QFYYQLQKHSDLASWNTHLLHQHSTLAQFL 608
Q Y+ + HS + + +HLL H L ++L
Sbjct: 130 QVYHLIDNHSCIQTAVSHLLRNHQALFKYL 159
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 418 IILTVLFHFCQNISNNMSFFIFSYITELGP 329
++LT L H + +N + F+ Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,764
Number of Sequences: 5004
Number of extensions: 61290
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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