Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40172
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227    135   3e-32
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401...    59   3e-09
10_08_0529 - 18565749-18565804,18566022-18566128,18566206-185664...    31   0.79 
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    30   2.4  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    30   2.4  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    29   5.6  
04_01_0212 - 2654691-2656976                                           28   9.7  

>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
          Length = 227

 Score =  135 bits (327), Expect = 3e-32
 Identities = 64/89 (71%), Positives = 69/89 (77%)
 Frame = +2

Query: 257 MQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHIT 436
           MQ CNL+CLPENYQMKYY YH LSWPQL +VAED  G IVGYVLAKMEED  +  HGHIT
Sbjct: 15  MQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSEPCHGHIT 74

Query: 437 SLAVKRSHRRLGLAQKLMNQASLAWLNAF 523
           SLAV RSHR+LGLA KLM+ A  A    F
Sbjct: 75  SLAVLRSHRKLGLATKLMSAAQAAMDQVF 103



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = +1

Query: 508 MVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDL 669
           M + F A+YVSLHVR+SNRAA NLYT++LG++I ++E KYYADGEDAY M + L
Sbjct: 99  MDQVFGAEYVSLHVRRSNRAAFNLYTSTLGYQIHDVEAKYYADGEDAYDMRKPL 152


>03_05_0805 -
           27839576-27839667,27839763-27839823,27840082-27840151,
           27841167-27841299,27841928-27842018,27842097-27842174
          Length = 174

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +2

Query: 269 NLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAV 448
           NL  L E + M +Y  +   WP   + A      ++GY++ K+E  GE + HGH+T+++V
Sbjct: 19  NLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWHGHVTAVSV 77

Query: 449 KRSHRRLGLAQKLMN 493
               RR  LA+KLMN
Sbjct: 78  ATEFRRQKLAKKLMN 92



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 523 QAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLS 672
           +A +V L VR SN  A+ +Y   LG+ +     +YY+  ED   M + LS
Sbjct: 103 KAYFVDLFVRASNMPAIRMY-EKLGYVVYRRVLRYYSGEEDGLDMRKALS 151


>10_08_0529 -
           18565749-18565804,18566022-18566128,18566206-18566410,
           18566500-18566812
          Length = 226

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 535 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSM 657
           VSLHV  +  AA+ LY  + GF++      YYA   DAY M
Sbjct: 134 VSLHVDPARAAAVALYRKA-GFQVDATVVGYYAPRRDAYRM 173


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 380 YVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNQASLA-WLNAFRQNMCH 541
           Y++ K     +D  HG + ++ +  +H R G+ + +MN+ SL  W+     N+ H
Sbjct: 485 YLMLKGNSTPKDG-HGAVDNMKIIPAHDRQGMFKTIMNRTSLRHWIKKENTNIGH 538


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 425 GHITSLAVKRSHRRLGLAQKLMNQASLAWLNAFRQNMCHCM*EKATE 565
           G+I  L V  SHRR+GLA +++ +   AW         +   +K+ E
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNE 150


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 434 TSLAVKRSHRRLGLAQKLMNQASLAWLNAFRQN 532
           T + VKRS+ RLG+ ++  N+ S+  L A  QN
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQN 886


>04_01_0212 - 2654691-2656976
          Length = 761

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 374 VGYVLAKMEED-GEDNRHGHITSLAVKRSHRRLGLAQK--LMNQASLAW 511
           VGY L   +E   ++  HG++T   VK +HR + + QK  L N     W
Sbjct: 563 VGYALTNDDEILPKEEYHGNLTEKKVKLAHRLVEMEQKPSLKNALRSKW 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,239,181
Number of Sequences: 37544
Number of extensions: 366539
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)