Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40172
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        37   0.016
SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)        36   0.049
SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        29   4.3  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 29   5.7  
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   28   7.5  

>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +2

Query: 281 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 460
           L E Y +  Y Y   +WP L ++A   K   VG ++ K++        G+I  LAV++  
Sbjct: 132 LSEPYSIYTYRYFIHNWPNLCFLAM-YKDQCVGAIVCKLDVHKSMVHRGYIAMLAVEKDF 190

Query: 461 RRLGLAQKLMNQASLAWL 514
           RR  +   L+ +A  A +
Sbjct: 191 RRHKIGTALVKKAIRAMI 208


>SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)
          Length = 118

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 404 DGEDNRHGHITSLAVKRSHRRLGLAQKLMN 493
           + ++  HGH+T+++V    RRLGLA KLM+
Sbjct: 8   EAQEQWHGHVTAVSVAPEFRRLGLAAKLMS 37


>SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 81  WYIVWKCCLSKFRFVRELLGG 143
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 81  WYIVWKCCLSKFRFVRELLGG 143
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 284 PENYQMKYYFYHGLSWPQLSYV 349
           P NY   YY+Y+   +P LSY+
Sbjct: 41  PHNYAYYYYYYYYYYYPALSYI 62


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 6   SKSLVIVDILKI*FYELLQLIKF*SWYIVWKCCLSKFRFVR 128
           S SL I D + I  Y+ L L +F S      CCL+ F F+R
Sbjct: 403 SSSLPITDEVTISIYKHLDLSRFDSAMFWAACCLAYFGFLR 443


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 739 PDSDLISKLSVACCQFYYQLQKHSDLASW 653
           P   +I  +   CC FY  + +HS+ A W
Sbjct: 393 PTMMMIDLIGCLCCAFYMLVMEHSETALW 421


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 353  EDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRL-GLAQKLMNQASLAWLN 517
            +DE G   G V+A M +  ED  H H  +LA + S R L   + K    A L  LN
Sbjct: 1245 DDEDGDEQGVVIATMNDKLED--HSHDQNLAHRTSRRFLCSFSLKTHGNAGLPQLN 1298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,639,548
Number of Sequences: 59808
Number of extensions: 450190
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)