Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40172
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 386 KHIQQYVLFHLQLHN*VGAKKVHGRSNI 303
           K+I   +  HL++H+  G   +HG   I
Sbjct: 313 KYITPLIQKHLKIHDTCGVHNLHGMPGI 340



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 783 GKLLITIINTGDINCLIQI*FLNYLSHAVSFIINCKSTQISHH 655
           G+ L+  ++ GD +  +   F  Y   A+SF+   K  +  HH
Sbjct: 161 GEHLLMTVDAGD-SMFVHT-FGAYFGLAISFVFGMKEKRKEHH 201


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 416 NRHGHITSLAVKRSHR 463
           N H H+ S AV+  HR
Sbjct: 146 NHHHHLQSTAVQDHHR 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,949
Number of Sequences: 438
Number of extensions: 3954
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)