Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40171
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   3.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 353  LKPLIKRSLNMWNEYRDGCYFIRQNFQELLYQFTMD-LNYYVTSKNY 490
            +KPLI++S+N   +     Y +R+  ++ L  +  +    Y++S NY
Sbjct: 1746 MKPLIQQSMNKIMKANPALYVLRERIRKGLQLYASEPQEQYLSSSNY 1792


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 63  LVKSYGFLKRLISNVVNDRGTYEWYLELLEQSTREIME 176
           LV+++G LKR  ++V  + G      + +EQ+ +E+++
Sbjct: 62  LVRAFGVLKRAAASVNREFGLDPKLADAIEQAAQEVID 99


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 305  LCAKNIESQQRKQENILKPLIKRSLNMWNEYRDGCYFIRQNFQELLYQ 448
            LC   I+ +Q K+  I   ++ + L   +E+ + CY  +++F  L++Q
Sbjct: 1084 LCGNIIDLKQPKRREISIEVLYQILLQNHEFSESCY--KRHFDRLIWQ 1129


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 396 YSFHIFKDRLIRGLSIFSCFL 334
           YSF  F  R +  LS+FSCFL
Sbjct: 729 YSFLSFLQRPLGHLSLFSCFL 749


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 165 LLWIVPAIPNTIRRSH 118
           L W +P +P+T+RR H
Sbjct: 728 LSWSLPEVPSTVRRHH 743


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87   KRLISNVVNDR-GTYEWYLELLEQSTREIMEHMNNEFIENIITEFLEKKFYTFQGKSALL 263
            K ++ N+ N R G Y ++ ++ E    +++E     F   +    L+  FY  Q      
Sbjct: 796  KEMMENLDNLRTGPYNFHDKVFENEINQLIESSREAFSATLFKAALKSCFYDLQNARDWY 855

Query: 264  GHHTA*QQLFR 296
               TA +++ R
Sbjct: 856  REVTADRKMHR 866


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 330 WLSMFLAHKRYAEITVVMPYDDLTGLISLEKYK 232
           W+   L HK  AE  VV   D L G I +   K
Sbjct: 142 WVENILTHKAEAERIVVEDPDPLNGFIVIPDLK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,768
Number of Sequences: 5004
Number of extensions: 59028
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)