Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40171
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    32   0.32 
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725...    29   3.0  
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    29   4.0  
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832...    28   5.2  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    27   9.2  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +3

Query: 99   SNVVNDRGTYEWYLELLEQSTREIMEHMNNEFIENIITEFLEKKFYT 239
            ++++  +  +E    +LE+S RE++ H NN+++  I++ F E +F T
Sbjct: 960  NDLIEAKIVHEQLCTMLEKSDRELLGH-NNQYLPKIVSIFAELEFIT 1005


>10_08_0489 +
           18269824-18270270,18271659-18271948,18272341-18272512,
           18272608-18272730,18272832-18272960,18273061-18273255,
           18273384-18273470,18273563-18273835,18274047-18274154,
           18274769-18275116
          Length = 723

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   KTVRFTIKSRRCTW*CEAPFPCKELRVP 85
           KTV F + S  C +  +A FPC  LR P
Sbjct: 291 KTVYFGLASEACQFFAQAGFPCPPLRNP 318


>02_04_0532 + 23711530-23711755,23712984-23713093,23713204-23715298,
            23716092-23716153,23716236-23716277,23716614-23716673,
            23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 287  VISAYLLCAKNIESQQRKQEN-ILKPLIKRSLNMWNEYRDGCYFIRQNFQELLYQFTMDL 463
            VI AY++  K++  Q + QE+ I  PL + S + +    +G    ++  Q +L    M+ 
Sbjct: 846  VIDAYIMLIKDM--QVKVQESMIFLPLNRNSTHWYVAVLNGA---KEKIQ-ILDSMRMEK 899

Query: 464  NYYVTSKNYVNPHRDFTEILTELNTL 541
            +YY   K+  N H +  E+  E N +
Sbjct: 900  SYYDKDKDLNNTHWNGKELSPEFNEM 925


>02_02_0253 -
           8325437-8325628,8325705-8325779,8325933-8326037,
           8326249-8326374,8326451-8326835,8326931-8327208,
           8327294-8327367,8327476-8327547,8327637-8327705,
           8340132-8340201,8340806-8340873,8341571-8341643,
           8341807-8341868,8342168-8342198
          Length = 559

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 117 RGTYEWYLELLEQSTREIMEHMNNEFIENIITEFLEKK---FYTFQGKSALLGHHTA*QQ 287
           +G  +   EL+++   ++M  M  E+IEN+  + L+ K     T +G S L  H+     
Sbjct: 251 KGENQTNAELMKEEDWQVMLQMEEEYIENLCAQILKFKPDLVITEKGLSDLAVHY----- 305

Query: 288 LFRRIFYALRTLKASRGNR 344
           L +    A+R L+ +  NR
Sbjct: 306 LGKAGVSAIRRLRKTDNNR 324


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 621 GKKKTNLPKVNVNFKPGYHELVFGKLAKVFNSVSI 517
           GK  ++LP +N  F     ELV G++   ++SV I
Sbjct: 323 GKYTSSLPTINKRFAATLGELVGGRVGIAYSSVGI 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,759
Number of Sequences: 37544
Number of extensions: 313253
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)