Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40171
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25610| Best HMM Match : MAT_Alpha1 (HMM E-Value=7.2)                31   1.0  
SB_52326| Best HMM Match : M (HMM E-Value=0.38)                        29   3.1  
SB_43313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_25610| Best HMM Match : MAT_Alpha1 (HMM E-Value=7.2)
          Length = 344

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 434 ELLYQFTMDLNYYVTSKNYVNPHRDFTEI-LTELNTLASFPKTSSW 568
           ELL++FT   +YY  S   V   RD+    +T+LN LA+ P  +SW
Sbjct: 238 ELLHEFTDGESYY-NSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 282


>SB_52326| Best HMM Match : M (HMM E-Value=0.38)
          Length = 237

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 87  KRLISNVVNDRGTYEWYLEL-LEQSTREIMEHMNNEFIENIITEFLEKKFY 236
           K ++++ VN   T    LE+ L++   EI E +  +  EN + E LEK FY
Sbjct: 163 KDILNSSVNHAETRRHQLEMALQEQHDEIQEMILQKSRENFVGEQLEKLFY 213


>SB_43313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 36  VPGNVKPHFLVKSYGFLKRLISNVVNDRGTYEWYLELLEQSTREIMEHMNN 188
           V  ++  HF +KSYGF  + +S+V       E+ ++ L+Q    +M+++ N
Sbjct: 193 VGSDIMSHFNLKSYGFKPKSLSDV-------EFVIDHLKQLNDSLMQYIEN 236


>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 105 RWKLIVLGTRNSLQGNGASHYQVHLRLLIVNRT 7
           RWK + +  RN +       YQ  +R++IVN T
Sbjct: 646 RWKPVPVHHRNGIIQGYRLRYQTEMRIIIVNLT 678


>SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 217 NSVIIFSINSLFMCSIISLVDCS 149
           NS+++  +NSL +  + SLV CS
Sbjct: 80  NSLVVLDVNSLVVLDVNSLVSCS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,029,880
Number of Sequences: 59808
Number of extensions: 384280
Number of successful extensions: 3167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3162
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)