Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40171
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical pr... 31 0.88
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 29 2.7
U80837-4|AAB37905.1| 504|Caenorhabditis elegans Hypothetical pr... 28 4.7
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 28 4.7
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 28 4.7
Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical pr... 27 8.2
U51999-5|AAA96086.1| 114|Caenorhabditis elegans Hypothetical pr... 27 8.2
U50068-7|AAB37735.1| 479|Caenorhabditis elegans Hypothetical pr... 27 8.2
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical
protein C53D6.4 protein.
Length = 323
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 384 IFKDRLIRGLSIFSCFLCWLSMFLAHKR 301
I ++RL+ GL IF+C L L+ F+ H R
Sbjct: 236 ITENRLVNGLYIFACLLVCLATFIYHVR 263
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 3 KLFDLLSKVEDVPGNVKPH-FLVKSYGFLKRLISNVVNDRGTYEWYLELLEQSTREIMEH 179
KLF+ LSK + + G K + L KS GFLK+ NV D+ E + L+ S + E
Sbjct: 252 KLFESLSKFKLLRGKDKAYPMLEKSRGFLKK-FQNVTVDKSNLEAVQKNLD-SLSSLAED 309
Query: 180 M--NNEFIENIITEFLEKK 230
+ N IE + F+ ++
Sbjct: 310 LKTNLHVIETLYNLFVTRQ 328
>U80837-4|AAB37905.1| 504|Caenorhabditis elegans Hypothetical
protein F07E5.6 protein.
Length = 504
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/62 (22%), Positives = 35/62 (56%)
Frame = +3
Query: 51 KPHFLVKSYGFLKRLISNVVNDRGTYEWYLELLEQSTREIMEHMNNEFIENIITEFLEKK 230
KP F K + ++ ++ + ++G ++ E + + +EI++++N +I +EF+ K
Sbjct: 36 KPGFTEKLW--IEHVVEVLFQNKGVALYFNEPFQLNIKEILKNININWIGTTFSEFVVWK 93
Query: 231 FY 236
F+
Sbjct: 94 FF 95
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 443 YQFTMDLNYYVTSKNYVNPHRDFTEILTELNTLASFPKTSS 565
Y FT D +YY +YVN + + + ++L P T S
Sbjct: 34 YSFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTTGS 74
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 443 YQFTMDLNYYVTSKNYVNPHRDFTEILTELNTLASFPKTSS 565
Y FT D +YY +YVN + + + ++L P T S
Sbjct: 34 YSFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTTGS 74
>Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical
protein C14C10.3b protein.
Length = 674
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 435 NYSTNSQWI*TITLHPKIMLIPTEISQKY 521
N T+SQW L P ML+ T +S+ Y
Sbjct: 380 NLETSSQWAHKRELRPNRMLVKTRLSELY 408
>Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical
protein C14C10.3a protein.
Length = 677
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 435 NYSTNSQWI*TITLHPKIMLIPTEISQKY 521
N T+SQW L P ML+ T +S+ Y
Sbjct: 380 NLETSSQWAHKRELRPNRMLVKTRLSELY 408
>U51999-5|AAA96086.1| 114|Caenorhabditis elegans Hypothetical
protein C43H6.3 protein.
Length = 114
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 233 LYFSREISPVRSSYGMTTVISAYLLCAKNIESQQRKQENILKPLIKRSLNMWNEYRDGCY 412
+Y R + + YG T++I+ + NI Q K + + PL+ +W +RD
Sbjct: 27 IYNGRTAIQIAADYGQTSIIAYLISIGANI---QDKDKYGITPLLSA---VWEGHRDAVK 80
Query: 413 FIRQN 427
+ QN
Sbjct: 81 LLLQN 85
>U50068-7|AAB37735.1| 479|Caenorhabditis elegans Hypothetical
protein C01G5.3 protein.
Length = 479
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 385 VERISRRMLFHKTKLSRITLPIHNGSKLL 471
VER+ R K +RIT PI SKLL
Sbjct: 122 VERVFRMFTAEKKNATRITAPIDEKSKLL 150
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 248 EISPVRSSYGMTTVISAYLLCAKNIESQQRKQENILKPLIKRSLNMWNEYRDG 406
E+ P S + LL ++N E ++ +N+ + + +N W+E R+G
Sbjct: 555 EMKPSLSLQIKNNHVGRQLLLSENSEIWEKSLKNVPAGVFQEMVNFWHEKRNG 607
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,719
Number of Sequences: 27780
Number of extensions: 312956
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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