Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40171
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    26   0.34 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 140 QIPFVGPTVIDH 105
           Q+PF GP VIDH
Sbjct: 25  QLPFCGPNVIDH 36


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 96  ISNVVNDRGTYEWY----LELLEQSTREIMEHMNNEFIENII 209
           ISN++N     E +    L+LLE   R++  + NN+ IE  +
Sbjct: 278 ISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFL 319


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 87  KRLISNVVNDRGTYEWY--LELLEQSTREIMEHMNNEFI 197
           +R I  V  +  T ++   +++++Q +  I E  NNE+I
Sbjct: 335 RRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEYI 373


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 347 NILKPLIKRSLNMWNEYRDGCYFIRQNFQELLYQFTMDLNYYVTSKNYVNPHRD 508
           ++L P+I  +LN     RD     R+ F+E+LY    +LN+ +  + Y + + D
Sbjct: 420 SLLNPIIYATLN-----RD----FRKPFREILYFRCSNLNHMMREEFYQSQYGD 464


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 236 YFSREISPVRSSYGMTTVIS 295
           + +R  +P R + G+TTV++
Sbjct: 243 WLNRNATPARVALGVTTVLT 262


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 236 YFSREISPVRSSYGMTTVIS 295
           + +R  +P R + G+TTV++
Sbjct: 243 WLNRNATPARVALGVTTVLT 262


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 236 YFSREISPVRSSYGMTTVIS 295
           + +R  +P R + G+TTV++
Sbjct: 182 WLNRNATPARVALGVTTVLT 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,615
Number of Sequences: 438
Number of extensions: 4227
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)