Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40171
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    29   3.3  
At3g54510.1 68416.m06032 early-responsive to dehydration protein...    29   3.3  
At3g04490.1 68416.m00476 exportin-related weak similarity to Exp...    28   5.8  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    27   7.7  

>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +3

Query: 18  LSKVE--DVPGNVKPHFLVKS--YGFLKRLISNVVNDRGTYEWYLELLEQSTREIMEHMN 185
           +SKVE  ++PG  +   L     YG    + S+ V        YLE+ E+ +++ +    
Sbjct: 80  ISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRT 139

Query: 186 NEFIENIITEFLE 224
            E++E+I+ + LE
Sbjct: 140 EEYLESIVCKNLE 152


>At3g54510.1 68416.m06032 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 617

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 348 FSCFLC--WLSMFLAHKRYAEITVVMPYDDLTGLISLEKYKIFFQEIPL 208
           FSC  C  + ++FL HK Y EI V+            +++ +  +++PL
Sbjct: 56  FSCLWCISFYALFLLHKEYKEILVIRLQQMKELRHRADQFTVLVRQVPL 104


>At3g04490.1 68416.m00476 exportin-related weak similarity to
           Exportin 4 (Exp4) (Swiss-Prot:Q9ESJ0) [Mus musculus] and
           (Swiss-Prot:Q9C0E2) [Homo sapiens]
          Length = 921

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 341 QENILKPLIKRSLNMWNEYRDGCY-FIRQNFQELLYQFTMDLNYYVTSKNYVNPHRDFTE 517
           Q +   P    ++ +  E+ + C   + QNF +  YQ+  D    VTSK  +  H    E
Sbjct: 149 QVSEFSPSTSSAMGLPREFHENCRKSLEQNFLKSFYQWAQDAALSVTSK-IIESHSSVPE 207

Query: 518 I 520
           +
Sbjct: 208 V 208


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 87  KRLISNVVNDRGTYEWYLELLEQSTREIMEHM 182
           ++L     ND G  + +L+LL++S RE+ E +
Sbjct: 666 RKLQGQRTNDEGEIDLWLKLLQESERELRERL 697


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,234
Number of Sequences: 28952
Number of extensions: 283223
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)