Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40170
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 25 0.82
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 25 0.82
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 0.82
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 1.1
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 1.9
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 1.9
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 1.9
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 5.8
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 7.6
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 7.6
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.6 bits (51), Expect = 0.82
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 405 TRHYLTVVN*EGYREYILSMVLESS 331
+++Y+T+++ G+R++I +M+ +S
Sbjct: 10 SKYYVTIIDAPGHRDFIKNMITGTS 34
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.6 bits (51), Expect = 0.82
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 405 TRHYLTVVN*EGYREYILSMVLESS 331
+++Y+T+++ G+R++I +M+ +S
Sbjct: 26 SKYYVTIIDAPGHRDFIKNMITGTS 50
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.82
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 405 TRHYLTVVN*EGYREYILSMVLESS 331
+++Y+T+++ G+R++I +M+ +S
Sbjct: 83 SKYYVTIIDAPGHRDFIKNMITGTS 107
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.1
Identities = 7/24 (29%), Positives = 19/24 (79%)
Frame = -1
Query: 402 RHYLTVVN*EGYREYILSMVLESS 331
++Y+T+++ G+R++I +M+ +S
Sbjct: 84 KYYVTIIDAPGHRDFIKNMITGTS 107
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 1.9
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 128 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSMTVITHFPVLGTRLC 298
I+SS +KT+ +K + NNY K+LY + ++I + + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138
Query: 299 VCGISLQARLP 331
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 1.9
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 128 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSMTVITHFPVLGTRLC 298
I+SS +KT+ +K + NNY K+LY + ++I + + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138
Query: 299 VCGISLQARLP 331
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 1.9
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 128 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSMTVITHFPVLGTRLC 298
I+SS +KT+ +K + NNY K+LY + ++I + + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV--YYGNFPPRPM 138
Query: 299 VCGISLQARLP 331
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 5.8
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 164 WKLTRDENNYGIPQKRLYGHSHFISDVVLSMTVITHFPVLGTRLCVCGISLQARLP 331
+K + NNY K+LY + ++I + + + V + +R + +Q ++P
Sbjct: 96 YKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYCGNFPSRPMGPWVPMQEQIP 151
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 519 NPIIVSCGWDRTVKVWHLTNW 581
NPI V WD+ V+ L W
Sbjct: 329 NPICVQIPWDKNVEA--LAKW 347
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.4 bits (43), Expect = 7.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 467 SWMVYLHSARVFQSLIVLSREPDTI*RLSTEKATESTSLVW 345
SW + +F L++L+ +++ LS + ST+L W
Sbjct: 2 SWQRVFLAVGLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,759
Number of Sequences: 438
Number of extensions: 4421
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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