Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40168
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 165 5e-42
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 2.2
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 2.9
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 25 6.6
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 6.6
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 8.8
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.8
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 8.8
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 165 bits (401), Expect = 5e-42
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 259 VIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDG 438
VIK+LLGLCE K+GKDNKA++ASNIM+VVGQYPRFL+AHWKFLKTVVNKLFEFMHE H+G
Sbjct: 521 VIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHEYHEG 580
Query: 439 VQDMACDTFIKIAIKCRRHFVTTQL 513
VQDMACDTFIKIA KCRRHFV QL
Sbjct: 581 VQDMACDTFIKIAQKCRRHFVAQQL 605
Score = 136 bits (329), Expect = 2e-33
Identities = 64/104 (61%), Positives = 76/104 (73%)
Frame = +2
Query: 2 ENENGEVVREFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
EN+ GE+VREF+K+TD+I LYK+MRE LVYLTHLD +DTE +MTEKL V GTEWSW+N
Sbjct: 435 ENDEGEIVREFVKETDTITLYKSMREVLVYLTHLDVVDTEIVMTEKLARIVVGTEWSWQN 494
Query: 182 LNTLCWAIGSISGALSEDDEKRXXXXXXXXXXXXXNRKREKITK 313
LNTLCWAIGSISGA++E+ EKR KR K K
Sbjct: 495 LNTLCWAIGSISGAMNEEMEKRFLVNVIKDLLGLCEMKRGKDNK 538
Score = 38.3 bits (85), Expect = 9e-04
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 495 FCHYSVGEACPFIEEILGTISTIICDLPTLQVHTFYEAVGH 617
F +GE PFI EI+ ++ DL Q HTFYEA G+
Sbjct: 600 FVAQQLGETEPFINEIIRNLAKTTEDLTPQQTHTFYEACGY 640
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 29 EFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVN 157
EF+KD N RE L L+H+ + + + ++LQ ++N
Sbjct: 19 EFVKDPALRNANARPREKLQRLSHIQFSELLTDVADELQRRIN 61
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 322 ASNIMHVVGQYPRFLRAHWKF--LKTVVNKLFEFMH 423
A +++ ++GQYP L+ ++F TVV LF+ H
Sbjct: 535 AYDLVRLLGQYPDVLKNAFRFQETSTVVTYLFKLTH 570
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 310 KAIIASNIMHVV-GQYPRFLRAHWKFLKTVVNKLFEFMHETHD--GVQDMACDTFIKIAI 480
K ++ N+ V GQY R + H K + V K FE+ E + G +A ++ +
Sbjct: 288 KDLLEHNVDVVTFGQYMRPTKRHLKVQEYVHPKKFEYWKEVAEKLGFLYVASGPLVRSSY 347
Query: 481 KCRRHFVTTQLEK 519
K +F+ ++K
Sbjct: 348 KAGEYFMENLIKK 360
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 218 QK*IQLPNIMCSSSSMTTQYHLLDFVI 138
QK +QL +++ S + TQ++LLD +I
Sbjct: 354 QKLLQLQHLLVSHADSFTQFNLLDEII 380
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 346 GQYPRFLRAHWKFLKTVVNKL 408
G+Y FL+ +W +++++ KL
Sbjct: 117 GKYGSFLQENWNLIESIITKL 137
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 510 LSSDKMSTAFYSNFYECITRHVLD 439
+SSD + F NF C+ H+ D
Sbjct: 307 VSSDNIGDIFSKNFLHCLINHLSD 330
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 189 HYVGQLDLFLELYLRMMKRDFW 254
H+ G + F+EL + KRD W
Sbjct: 118 HHFGTKEEFMELIQELHKRDIW 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,006
Number of Sequences: 5004
Number of extensions: 56190
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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