Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40168
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0104 - 12598165-12598257,12598568-12598627,12598958-12600124 31 0.73
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 31 0.97
03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170... 30 1.3
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 29 3.0
03_02_0113 + 5697089-5697245,5697983-5698056,5698217-5698296,569... 29 3.9
08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586 28 5.2
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 5.2
10_07_0035 - 12173011-12173730 27 9.0
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 27 9.0
>01_03_0104 - 12598165-12598257,12598568-12598627,12598958-12600124
Length = 439
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 149 QVNGTEWSWKNLNTLCWAIGSISGALSEDDEK 244
+V T W+W N+N LCW + L DD++
Sbjct: 228 RVGATHWTWINVNELCW---NYHDVLYNDDDR 256
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 149 QVNGTEWSWKNLNTLCWAIGSISGALSEDDEK 244
+V T W+W N+N LCW + L DD++
Sbjct: 226 RVGDTHWTWINVNELCW---NYHDVLYNDDDR 254
>03_05_0311 +
23014666-23014806,23015454-23015959,23016661-23017051,
23017192-23017292,23017542-23017644,23018048-23018120,
23018244-23018659
Length = 576
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 316 IIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCR-- 489
++ + ++ ++ P ++ +FL V K F+ + + +GV C + + C
Sbjct: 386 VVDNRVVFLLESMPGEIKDSARFLSLVPQKQFKVIADVDEGVFTCKCKQWEHTGMFCTHM 445
Query: 490 -RHFVTTQLEK--PVLLLKKY 543
R FV Q+EK V +LK+Y
Sbjct: 446 LRAFVHVQVEKIPAVYILKRY 466
>01_05_0548 +
23149271-23149568,23149766-23149845,23150137-23150223,
23150421-23150729,23150774-23150899,23151977-23152360,
23152603-23152608
Length = 429
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 32 FMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
F + DS NMR L +HLD LD M K+ + + + SW+N
Sbjct: 183 FEEQNDSFVRVPNMRNMLA--SHLDDLDLPTDMAIKVDHIIEKYQLSWRN 230
>03_02_0113 +
5697089-5697245,5697983-5698056,5698217-5698296,
5699017-5699168,5700750-5700991
Length = 234
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -1
Query: 506 VVTKCRRHFIAIFMNVSHAMSWTPSCVSCMNSKSLLTTVFKNFQCARRK 360
VV +CR H A N+ H W V + K +F+C K
Sbjct: 84 VVVECRGHDAARLQNIDHLHGWEDDIVGLVEKKHGNRKFSLSFECETLK 132
>08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586
Length = 356
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 371 ARRKRGYCPTTCIMLLAIIALLSFPFFCSQRP 276
ARR+RG+ P T + LL ++ L FF + P
Sbjct: 2 ARRRRGF-PATLVTLLRLVGCLLLAFFLAAPP 32
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 587 LQCW*ITNYSTNGAQYFFNKRTGFSN*VVTKC 492
LQCW + ++S + QY N F + +V KC
Sbjct: 610 LQCWGVVDFSADSGQYALNGNM-FIDKIVRKC 640
>10_07_0035 - 12173011-12173730
Length = 239
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 62 YKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKNLNTL 193
Y+NM LV + H+ + +M ++LQ ++W NL L
Sbjct: 59 YRNMSGVLVLVPHVRPMCDAPLMVQQLQKMEMRSDWEIPNLAAL 102
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +1
Query: 247 IFGIVIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFMHE 426
IF ++++LL L K + N A+I + + +G FLR + + +VNKLFE +
Sbjct: 454 IFEGLLQQLLSL---KWSQPNLAVIHGHYLDSLGP---FLRHYPDAVACIVNKLFEILTS 507
Query: 427 THDGVQD 447
+QD
Sbjct: 508 LPITIQD 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,267
Number of Sequences: 37544
Number of extensions: 306881
Number of successful extensions: 656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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