Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40168
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   2e-42
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)                      29   4.0  
SB_21943| Best HMM Match : Ran_BP1 (HMM E-Value=1.5)                   28   5.3  
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score =  169 bits (411), Expect = 2e-42
 Identities = 77/91 (84%), Positives = 82/91 (90%)
 Frame = +1

Query: 241 KEIFGIVIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFM 420
           K     VIK+LLGLCE K+GKDNKAIIASNIM++VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 209 KRFLVTVIKDLLGLCEIKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 268

Query: 421 HETHDGVQDMACDTFIKIAIKCRRHFVTTQL 513
           HETHDGVQDMACDTFIKIA KCRRHFV  Q+
Sbjct: 269 HETHDGVQDMACDTFIKIAQKCRRHFVQVQV 299



 Score =  165 bits (401), Expect = 3e-41
 Identities = 74/82 (90%), Positives = 78/82 (95%)
 Frame = +2

Query: 2   ENENGEVVREFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
           EN+ GEVVREFMKDTD+INLYKNMRETLVYLTHLDY DTERIMTEKLQNQVNG EWSWKN
Sbjct: 129 ENDQGEVVREFMKDTDAINLYKNMRETLVYLTHLDYQDTERIMTEKLQNQVNGIEWSWKN 188

Query: 182 LNTLCWAIGSISGALSEDDEKR 247
           LNTLCWAIGSISGA+ E+DEKR
Sbjct: 189 LNTLCWAIGSISGAMHEEDEKR 210



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 495 FCHYSVGEACPFIEEILGTISTIICDLPTLQ 587
           F    VGE  PFIEEIL +  +IICDL  LQ
Sbjct: 294 FVQVQVGEVMPFIEEILNSTQSIICDLQPLQ 324


>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
          Length = 559

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 476 AIFMNVSHAMSWTPSCVSCMNSKSLLTTVFKNFQCARRKRGYCPTTCIMLLAIIALLSFP 297
           A+F   +   S+TP  +  + ++    T    F    R + Y P   +  L +   +S+ 
Sbjct: 133 ALFSLFTRDQSYTPVALFSLFTRDQSYTPEALFSLFTRDQSYTPVAYLTYLTLNVHMSYH 192

Query: 296 FFCSQ 282
           FFC++
Sbjct: 193 FFCAE 197


>SB_21943| Best HMM Match : Ran_BP1 (HMM E-Value=1.5)
          Length = 191

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 89  YLTHLDYLDTERIMTEKLQNQVNGTEWSWKNLNTLCWAIGSISGALSEDDEK 244
           YL +  Y  TE ++   LQN V   + +W     L W     S  +S +D K
Sbjct: 84  YLGNCLYETTEPLVRRCLQNSVRDNDAAWPKFGKLKWEFDRKSKDISINDIK 135


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 303 FSLFLFTET*KLFNHNTKNLFSSSSDRAPEIDPIAQHNVFKFFH 172
           + L LF +T +L    TK+  SSS D   E+D    +   +F H
Sbjct: 346 YLLKLFQQTFQLLQRITKDSASSSDDHLSELDESYLNKFTEFLH 389


>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 335 IMLLAIIALLSFPFFCSQRPRSSLITIPKISFHHP 231
           + L AI+ LL F  FC  RPR   +  P++    P
Sbjct: 54  LTLNAILTLLVFALFCLLRPRMQRLYSPRLLLIKP 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,538
Number of Sequences: 59808
Number of extensions: 379107
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)