Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40168
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   170   6e-43

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score =  170 bits (414), Expect = 6e-43
 Identities = 74/90 (82%), Positives = 84/90 (93%)
 Frame = +1

Query: 241 KEIFGIVIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFM 420
           K    +VI++LLGLCEQK+GKDNKA+IASNIM+VVGQYPRFLRAHWKFLKTV+NKLFEFM
Sbjct: 524 KRFLVLVIRDLLGLCEQKRGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVINKLFEFM 583

Query: 421 HETHDGVQDMACDTFIKIAIKCRRHFVTTQ 510
           HETH+GVQDMACDTFIKI+IKC+RHFV  Q
Sbjct: 584 HETHEGVQDMACDTFIKISIKCKRHFVIVQ 613



 Score =  136 bits (328), Expect = 2e-32
 Identities = 66/104 (63%), Positives = 75/104 (72%)
 Frame = +2

Query: 2   ENENGEVVREFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
           EN+ GEVVRE +KDTDSI LY+NMRETLVYLTHLD  DTE  MTEKL +QVNG E+SWKN
Sbjct: 444 ENDQGEVVREMVKDTDSIALYRNMRETLVYLTHLDNKDTEVKMTEKLASQVNGGEFSWKN 503

Query: 182 LNTLCWAIGSISGALSEDDEKRXXXXXXXXXXXXXNRKREKITK 313
           LN LCWA+GSISG + E+DEKR              +KR K  K
Sbjct: 504 LNRLCWAVGSISGTMVEEDEKRFLVLVIRDLLGLCEQKRGKDNK 547



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +3

Query: 525 PFIEEILGTISTIICDLPTLQVHTFYEAVGH 617
           PF+EE+L  ++ IICDL   QVH FYEAVGH
Sbjct: 619 PFVEEMLENLTGIICDLSHAQVHVFYEAVGH 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,246
Number of Sequences: 27780
Number of extensions: 312806
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)