Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40168
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     27   0.11 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 361 FLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCRRHFVTTQLEK 519
           FLR  W    TV + +   +H  HD    +A +TF  +  K RR  +   L++
Sbjct: 162 FLRTRWSISGTVFDLIN--IHLFHDASNFIAMETFPSVYSKTRRRALEHTLDR 212


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 HFVTTQLEKPVLLLKKYWAPLVL 561
           HF +  LE  VLLL+  W  L++
Sbjct: 254 HFTSLPLEDQVLLLRAGWNELLI 276


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 HFVTTQLEKPVLLLKKYWAPLVL 561
           HF +  LE  VLLL+  W  L++
Sbjct: 254 HFTSLPLEDQVLLLRAGWNELLI 276


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +1

Query: 166 VVMEELEHIMLGNWIYFWSSI 228
           V+    +H+   NW+Y W  +
Sbjct: 616 VINPHQQHLDQWNWVYEWKEL 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,134
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)