Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40168
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...   154   4e-38
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...   149   1e-36
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    29   1.9  
At3g13010.1 68416.m01621 hAT dimerisation domain-containing prot...    29   2.5  
At2g07710.1 68415.m00998 hypothetical protein                          27   7.5  
At5g10180.1 68418.m01178 sulfate transporter identical to sulfat...    27   10.0 
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   10.0 

>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score =  154 bits (374), Expect = 4e-38
 Identities = 69/86 (80%), Positives = 77/86 (89%)
 Frame = +1

Query: 256 IVIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHD 435
           +VI++LL LCE  KGKDNKA+IASNIM+VVGQYPRFLRAHWKFLKTVVNKLFEFMHETH 
Sbjct: 522 MVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHP 581

Query: 436 GVQDMACDTFIKIAIKCRRHFVTTQL 513
           GVQDMACDTF+KI  KC+R FV  Q+
Sbjct: 582 GVQDMACDTFLKIVQKCKRKFVIVQV 607



 Score =  120 bits (289), Expect = 8e-28
 Identities = 52/82 (63%), Positives = 65/82 (79%)
 Frame = +2

Query: 2   ENENGEVVREFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
           E+ENG +VRE MKD D +  YK MRETL+YL+HLD+ DTE+ M  KL  Q++G EW+W N
Sbjct: 437 EDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLNKQLSGEEWAWNN 496

Query: 182 LNTLCWAIGSISGALSEDDEKR 247
           LNTLCWAIGSISG+++ED E R
Sbjct: 497 LNTLCWAIGSISGSMAEDQENR 518



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 480 KMPSTFCHYSVGEACPFIEEILGTISTIICDLPTLQVHTFYEAVGH 617
           K    F    VGE  PF+ E+L  ++T + DL   Q+H+FYE+VG+
Sbjct: 597 KCKRKFVIVQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESVGN 642


>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score =  149 bits (361), Expect = 1e-36
 Identities = 67/86 (77%), Positives = 76/86 (88%)
 Frame = +1

Query: 256 IVIKELLGLCEQKKGKDNKAIIASNIMHVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHD 435
           +VI++LL LCE  KGKDNKA+IASNIM+VVGQY RFLRAHWKFLKTVV+KLFEFMHETH 
Sbjct: 523 MVIRDLLSLCEVVKGKDNKAVIASNIMYVVGQYSRFLRAHWKFLKTVVHKLFEFMHETHP 582

Query: 436 GVQDMACDTFIKIAIKCRRHFVTTQL 513
           GVQDMACDTF+KI  KC+R FV  Q+
Sbjct: 583 GVQDMACDTFLKIVQKCKRKFVIVQV 608



 Score =  115 bits (276), Expect = 3e-26
 Identities = 50/82 (60%), Positives = 63/82 (76%)
 Frame = +2

Query: 2   ENENGEVVREFMKDTDSINLYKNMRETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKN 181
           E+ENG +VRE MKD D +  YK MRETL+YL+HLD+ DTE+ M  KL  Q++G EW+W N
Sbjct: 438 EDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLSKLSKQLSGEEWAWNN 497

Query: 182 LNTLCWAIGSISGALSEDDEKR 247
           LNTLCWAIGSISG++  + E R
Sbjct: 498 LNTLCWAIGSISGSMVVEQENR 519



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 480 KMPSTFCHYSVGEACPFIEEILGTISTIICDLPTLQVHTFYEAVG 614
           K    F    VGE+ PF+ E+L  ++TI+ DL   Q+HTFYE+VG
Sbjct: 598 KCKRKFVIVQVGESEPFVSELLSGLATIVGDLQPHQIHTFYESVG 642


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 385 LKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCR---RHFVTTQLEKPVLLLKK 540
           LKT    L E  HE HD ++     T    A+K R   R+   +QLE P L  KK
Sbjct: 153 LKTPGKSLSETDHEPHDRIKKSVLGTGSPAAVKKRKIARNDEKSQLETPTLKRKK 207


>At3g13010.1 68416.m01621 hAT dimerisation domain-containing protein
           contains Pfam profile PF04937: Protein of unknown
           function (DUF 659), weak hit to PF05699: hAT family
           dimerisation domain
          Length = 572

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 237 SSSDRAPEIDPIAQHNVFKFFHDHSVPFT 151
           ++S+ A E + +AQ +V +FF++H V F+
Sbjct: 83  TASETAAEAEKLAQMDVAQFFYEHGVDFS 111


>At2g07710.1 68415.m00998 hypothetical protein
          Length = 150

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 264 NHNTKNLFSSSSDRAPEIDPIAQHN 190
           NH+T    SS    +P +DP+A+H+
Sbjct: 44  NHSTPRSSSSHHHFSPSLDPVAEHH 68


>At5g10180.1 68418.m01178 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:2114104
          Length = 677

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 452 AMSWTPSCVSCMNSKSLLTTVFKNFQCARRKRGYCPTTCIMLLAIIALLSFP 297
           A+++   C + M++  +  TVF   +C  R   Y P   I +LA I L + P
Sbjct: 424 AVNFAAGCETAMSNIVMAVTVFVALECLTRLLYYTP---IAILASIILSALP 472


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 77  ETLVYLTHLDYLDTERIMTEKLQNQVNGTEWSWKNLNTLCWAIGSISGALSED 235
           E+LV L  L  LD  +    +L  ++      WKNLN L  A   +SG + ++
Sbjct: 493 ESLVKLKQLSRLDLSK---NQLSGEIPRELRGWKNLNELNLANNHLSGEIPKE 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,300
Number of Sequences: 28952
Number of extensions: 273663
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)