Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40167
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 50 3e-07
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.40
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 29 0.53
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 28 0.92
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 28 0.92
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 2.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.6
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 8.6
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 49.6 bits (113), Expect = 3e-07
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +2
Query: 23 IDVSDFLTKKQASEP-ALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLY 199
+++SDFL + P +L + +E+LY +KLW QLT L F P + + LY
Sbjct: 7 VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLY 64
Query: 200 NNFLTTFESKINPLSLVETLLISWNSMSTREML 298
NF+ +F IN L V L ++ S S E L
Sbjct: 65 TNFVNSFRPNINQLKAVYMGLKAFESCSNDEAL 97
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.5 bits (63), Expect = 0.40
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 253 DIAHIV-EQYVNKRDAVTFLEKVETKVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIE 429
DI I+ E++ ++D F EK + N + + + L Q Y+ ++ DY E + +
Sbjct: 3018 DITDIITEEFAVEKDV--FGEKTVVDLIPNGRNIPVTE-LNKQNYVNRMVDYKLRESVKD 3074
Query: 430 HLDSTLEDADGVTPVH 477
L S L+ + P H
Sbjct: 3075 QLKSLLDGFSDIIPSH 3090
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 29.1 bits (62), Expect = 0.53
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 92 LEELYNKKLWHQLTLKLQEFVKNPALQRGDNLI---QLYNNFLTTFESKI 232
+E Y WH+L +LQ+ P L NL+ Q Y + F SKI
Sbjct: 81 IEPNYLLTAWHELWEELQDTYMTPILDSEANLLLLTQFYGKISSLFRSKI 130
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 28.3 bits (60), Expect = 0.92
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 80 DWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVETL 259
DW + +Y + +TL N A+ RG N+I + LTT E+K NP L+ L
Sbjct: 829 DWYDHKVIYRQHN-ENITLSAPLTHINVAI-RGGNIIPMQKPSLTTHETKQNPYDLLVAL 886
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 28.3 bits (60), Expect = 0.92
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 173 RGDNLIQLYNNFLTTFESKINPLSLV 250
RG N+I L TT+ES+ NP SL+
Sbjct: 861 RGGNIIPLQQPGYTTYESRNNPYSLL 886
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 173 RGDNLIQLYNNFLTTFESKINPLSLVETL 259
RG +++ + LTT+ES+ NP +L+ L
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLLVAL 864
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 427 EHLDSTLEDADGVTPVHGRFYKLASEYSES 516
E +D+ ++ DG HG F L SEY S
Sbjct: 756 ETMDTVIKLKDGELKAHGLFLSLRSEYFSS 785
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -2
Query: 208 KVIVQLYEVVSPLQGRILDEFLQF*SKLVP*FFIVKFL 95
+V+ ++Y VVS +GR++DE ++ + P FFIVK L
Sbjct: 876 EVLGRVYGVVSKRRGRVIDEEMK---EGTP-FFIVKAL 909
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 90 FAQSAAKAGSLACFLVKKSLTSITAN 13
F+Q + G L CF+ KK + ++T N
Sbjct: 724 FSQISFLCGFLNCFIQKKGIHNVTPN 749
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 268 VEQYVNKRDAVTFLEKVETKVTMNDEALALCKVLQGQIYIEQLND 402
VE +RD VTF +E V + +A C + + + E L D
Sbjct: 89 VESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRD 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,735
Number of Sequences: 5004
Number of extensions: 53125
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -