Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40167
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 89 3e-18
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 84 7e-17
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 31 0.94
01_07_0384 + 43209423-43210241 29 2.2
01_05_0624 + 23772613-23774671,23774737-23775596 29 2.2
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661... 28 6.6
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 28 6.6
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +2
Query: 38 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 217
F+ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD LIQLYNNF+T
Sbjct: 5 FVESQREARPELADPYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTLIQLYNNFITD 64
Query: 218 FESKINPLSLVETLLIS 268
FE+KIN L L +I+
Sbjct: 65 FETKINLLKLAHFAVIA 81
Score = 36.3 bits (80), Expect = 0.019
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 274 QYVNKRDAVTFLEKV-----ETKVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLD 438
QY +K A++FLE V ETK +E + K+ I +E+ N + +K+++
Sbjct: 84 QYPDKDAAISFLEGVITKLRETKDLRINEPILYVKMQIAAINLEKGNQKE-CKKLLDEGK 142
Query: 439 STLEDADGVTP-VHGRFYKLASEYSES 516
STL+ V P VH Y ++S+Y ++
Sbjct: 143 STLDSMTDVDPTVHASLYWISSQYHKA 169
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 84.2 bits (199), Expect = 7e-17
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +2
Query: 38 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 217
++ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD +IQLYNNF++
Sbjct: 5 YVEAQRQARPDLADAYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNFISD 64
Query: 218 FESKINPLSLVETLLIS 268
FE+KIN L L +I+
Sbjct: 65 FETKINLLKLAHFAVIA 81
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 274 QYVNKRDAVTFLEKV-----ETKVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLD 438
QY +K A++FLE V ET+ DE + K+ I +E+ D +K+++
Sbjct: 84 QYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVKMQIAAINLEK-GDQKECKKLLDEGK 142
Query: 439 STLEDADGVTP-VHGRFYKLASEYSES 516
STL+ V P VH FY ++S+Y ++
Sbjct: 143 STLDSMTDVDPTVHASFYWISSQYHKA 169
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 265 IVEQYVNKRDAVTFLEKVETKVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLDST 444
+ E V VT E V+ + ++D+ + K +Q + E + AAE+ +EH +T
Sbjct: 1338 VQEPMVEDEKTVTTEETVQDPMVVDDKTMTTEKTVQDSMVEEGGTNIAAAEETVEHAAAT 1397
Query: 445 LEDADG 462
E G
Sbjct: 1398 AEALAG 1403
>01_07_0384 + 43209423-43210241
Length = 272
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 605 QHVQW-QVGPHPRRRTQRTESCAVVTASGTTDSEYSEANL 489
Q + W + GP PRRR +++ S ++ T++ T+ + S A++
Sbjct: 190 QELVWAEKGPAPRRRPRQSSSASISTSTSTSYTGTSSASI 229
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +2
Query: 35 DFLTKKQASEPALAADWAKLEELYNKKL-WHQLTLKLQEFVKNPALQRGDNLIQLYNNFL 211
DF + K + + + L EL N L W+QL + + + L + +L YN F
Sbjct: 775 DFSSNKLSGH--IPKEIGSLVELVNLNLSWNQLAGNIPDQIGE--LHQLTSLDLSYNQFS 830
Query: 212 TTFESKINPLSLVETLLISWNSMSTREMLSHSL 310
S ++ L+ + L +S+N++S R H L
Sbjct: 831 GEIPSSLSNLTFLSYLNLSYNNLSGRIPRGHQL 863
>09_04_0469 +
17864265-17864789,17865648-17865854,17865936-17866175,
17866705-17866771,17866872-17867015,17867202-17867297,
17867818-17867975,17868054-17868190,17868551-17868752
Length = 591
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 107 NKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLS 244
N K W Q+ +L F+K +G ++ Y+N +F S + P++
Sbjct: 178 NFKEWKQVLQELGRFLKADGAYKGSRSLR-YDNLFDSFPSNLAPIA 222
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 358 CKVLQGQIYIEQLNDYDAAEKIIEHLDSTLEDADGVTPVHGRFYKLAS 501
CK+L G ++ L YD A+ ++ ++ LE +D V G+F AS
Sbjct: 83 CKILFGSMH---LKSYDWAKSAPDNDNNALETSDATDSVLGKFIAHAS 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,508
Number of Sequences: 37544
Number of extensions: 344101
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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